Bombax ceiba (bombax_ceiba)
Imported from atlas release summary for Bombax ceiba.
2549
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2549
Candidate Genes
C4H
6.66%
C3'H/CYP98A
6.06%
BAHD
5.35%
UGT
4.12%
CYP76
3.96%
IFS
3.8%
7DLGT
3.43%
F3H
3.41%
Other Families
63.2%
More Families (96)
T3O
210
3.32%
UFGT
209
3.3%
POD
208
3.28%
4CL
195
3.08%
DWF4/CYP90B1
170
2.68%
NMT
142
2.24%
CODM/T6ODM
131
2.07%
BR6OX2/CYP85A2
122
1.93%
F3'H/CYP75B
111
1.75%
STR
104
1.64%
H6H
100
1.58%
CAD
96
1.52%
LAC
84
1.33%
CYP71
83
1.31%
CAS
80
1.26%
TPS
77
1.22%
HCT
70
1.11%
SMT1/SMT2/SMT3
70
1.11%
GES
67
1.06%
CSE
66
1.04%
TRI/TRII
65
1.03%
BBE
65
1.03%
T16H
62
0.98%
CYP90D1
59
0.93%
F3'5'H/CYP75A
56
0.88%
G8O/G8H
54
0.85%
COMT
54
0.85%
RAS
50
0.79%
IO
49
0.77%
PYKS
48
0.76%
IFR
48
0.76%
PAL
48
0.76%
7DLH
45
0.71%
GS
44
0.69%
FNS
42
0.66%
F5H/CYP84A
38
0.6%
TAT
35
0.55%
PMT
34
0.54%
NCS
34
0.54%
ANR
34
0.54%
CPD/CYP90A1
34
0.54%
16OMT
32
0.51%
CCR
32
0.51%
ANS/LDOX
30
0.47%
LAMT
28
0.44%
SLS
24
0.38%
SGD
24
0.38%
BR6OX1/CYP85A1
24
0.38%
COR
23
0.36%
GGPPS
23
0.36%
SQE
22
0.35%
DFR
19
0.3%
CYP719
18
0.28%
CCoAOMT
18
0.28%
CYP51G1
17
0.27%
FPPS
17
0.27%
8HGO
16
0.25%
CHS
16
0.25%
CYP80B1
15
0.24%
MPO
13
0.21%
TYDC_DDC
12
0.19%
CPR
12
0.19%
CNMT
11
0.17%
HPPR
11
0.17%
ROT3/CYP90C1
11
0.17%
AACT
11
0.17%
ODC
9
0.14%
SMO1/SMO2
9
0.14%
HMGR
9
0.14%
TDC
8
0.13%
SQS/FDFT1
8
0.13%
CHI
7
0.11%
DXS
7
0.11%
ADC
6
0.09%
HDR/IspH
6
0.09%
ISY
5
0.08%
MVK
5
0.08%
MVD
5
0.08%
HMGS
5
0.08%
DET2
4
0.06%
DWF7
4
0.06%
HDS/IspG
4
0.06%
IDI
4
0.06%
MDS/IspF
4
0.06%
FK
3
0.05%
MCT/IspD
3
0.05%
DXR
3
0.05%
PMK
3
0.05%
DWF1
2
0.03%
GPPS
2
0.03%
XMT_MXMT_DXMT
1
0.02%
FLS
1
0.02%
HYD1
1
0.02%
CPI1
1
0.02%
DWF5
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 774 | 21 | BAHD (273) | View species results |
| Phenylpropanoid pathway | 551 | 11 | POD (204) | View species results |
| Alkaloid pathway | 541 | 24 | 7DLGT (105) | View species results |
| Flavonoid pathway | 313 | 13 | UFGT (186) | View species results |
| Rosmarinic acid pathway | 212 | 7 | C4H (83) | View species results |
| Steroid pathway | 158 | 12 | CAS (71) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2500 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 459 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BceiScaffold100005090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold10004890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1050017110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1050018890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1050018900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1050018910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1050018940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1060021950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1060021970 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1250058560 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1260063680 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1400084920 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1400086770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1450098310 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1450098890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1450098910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1450099650 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BceiScaffold1470100900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1530105350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1530106350 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1530106360 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1530106410 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1530106420 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1530106430 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold15590108950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1560112450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold160115120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1680127160 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| BceiScaffold1690130320 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BceiScaffold17490139750 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1810142860 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold1920154500 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold2020163900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold2200179910 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold22730199660 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold240214270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold240214300 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold250229830 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BceiScaffold250230570 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold250231150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold250231160 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold2850268160 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold2870269230 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold2930272310 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold2950272660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold3000284760 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold30280200 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold3200292040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BceiScaffold3290299530 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BceiScaffold3500305440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |