PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OBART08G20250.1 Terpenoid HMGR medium pass
OBART09G14930.1 Terpenoid HMGR medium pass
OBART03G01460.1 Terpenoid HMGS high pass
OBART08G22400.1 Terpenoid HMGS high pass
OBART09G16770.1 Terpenoid HMGS high pass
OBART05G16440.1 Terpenoid IDI medium pass
OBART07G17800.1 Terpenoid IDI medium pass
OBART01G39790.1 Terpenoid MCT/IspD high pass
OBART04G25570.1 Terpenoid MCT/IspD low borderline
OBART04G25570.2 Terpenoid MCT/IspD low borderline
OBART04G25570.3 Terpenoid MCT/IspD low borderline
OBART08G06060.1 Terpenoid MCT/IspD low borderline
OBART11G18320.1 Terpenoid MCT/IspD low borderline
OBART01G38840.1 Terpenoid MDS/IspF low borderline
OBART01G45390.1 Terpenoid MDS/IspF low borderline
OBART02G27930.1 Terpenoid MDS/IspF high pass
OBART02G00600.1 Terpenoid MVD medium pass
OBART02G00720.1 Terpenoid MVD medium pass
OBART07G22370.1 Terpenoid MVD low borderline
OBART12G03200.1 Terpenoid MVD low borderline
OBART02G35190.1 Terpenoid MVK low borderline
OBART03G39850.1 Terpenoid MVK low borderline
OBART06G03340.1 Terpenoid MVK low borderline
OBART08G04300.1 Terpenoid MVK medium pass
OBART09G07960.2 Terpenoid MVK low borderline
OBART10G05960.1 Terpenoid MVK medium pass
OBART03G10870.1 Terpenoid PMK medium pass
OBART03G10870.2 Terpenoid PMK medium pass
OBART03G30040.1 Terpenoid PMK medium pass
OBART01G14090.1 Terpenoid TPS medium pass
OBART01G22460.1 Terpenoid TPS medium pass
OBART01G34740.1 Terpenoid TPS medium pass
OBART02G01670.1 Terpenoid TPS medium pass
OBART02G12250.1 Terpenoid TPS medium pass
OBART02G12250.2 Terpenoid TPS medium pass
OBART02G15730.1 Terpenoid TPS medium pass
OBART02G15740.1 Terpenoid TPS medium pass
OBART02G15760.1 Terpenoid TPS medium pass
OBART02G15770.1 Terpenoid TPS medium pass
OBART02G21250.1 Terpenoid TPS medium pass
OBART02G21280.1 Terpenoid TPS medium pass
OBART02G21300.1 Terpenoid TPS medium pass
OBART02G21300.2 Terpenoid TPS medium pass
OBART02G21300.3 Terpenoid TPS medium pass
OBART02G21300.4 Terpenoid TPS medium pass
OBART02G21300.5 Terpenoid TPS medium pass
OBART02G21300.6 Terpenoid TPS medium pass
OBART02G21320.1 Terpenoid TPS medium pass
OBART02G21320.2 Terpenoid TPS medium pass
OBART02G21320.3 Terpenoid TPS medium pass