PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OBART10G15640.1 Terpenoid CYP76 low borderline
OBART10G15650.1 Terpenoid CYP76 medium borderline
OBART10G15660.1 Terpenoid CYP76 medium borderline
OBART10G15670.1 Terpenoid CYP76 medium pass
OBART10G16350.1 Terpenoid CYP76 low borderline
OBART10G16360.1 Terpenoid CYP76 low borderline
OBART10G16360.2 Terpenoid CYP76 low borderline
OBART11G09890.1 Terpenoid CYP76 low borderline
OBART11G09890.2 Terpenoid CYP76 low borderline
OBART11G10900.1 Terpenoid CYP76 medium borderline
OBART11G13010.1 Terpenoid CYP76 medium borderline
OBART11G13630.1 Terpenoid CYP76 medium borderline
OBART11G15310.1 Terpenoid CYP76 low borderline
OBART11G20600.1 Terpenoid CYP76 low borderline
OBART12G05550.1 Terpenoid CYP76 medium pass
OBART12G07920.1 Terpenoid CYP76 medium borderline
OBART12G17050.1 Terpenoid CYP76 medium pass
OBART12G17060.1 Terpenoid CYP76 medium borderline
OBART01G00500.1 Terpenoid DXR high pass
OBART05G16180.1 Terpenoid DXS medium pass
OBART06G02820.1 Terpenoid DXS medium pass
OBART07G05850.1 Terpenoid DXS medium pass
OBART07G05850.2 Terpenoid DXS medium pass
OBART12G05740.1 Terpenoid DXS low borderline
OBART01G27510.1 Terpenoid FPPS low borderline
OBART01G27900.1 Terpenoid FPPS medium pass
OBART01G37820.1 Terpenoid FPPS medium pass
OBART02G37680.1 Terpenoid FPPS low borderline
OBART02G37680.2 Terpenoid FPPS low borderline
OBART04G28030.1 Terpenoid FPPS medium pass
OBART04G28030.2 Terpenoid FPPS medium pass
OBART04G28040.1 Terpenoid FPPS medium pass
OBART05G24530.1 Terpenoid FPPS medium pass
OBART06G04530.1 Terpenoid FPPS medium pass
OBART07G21710.1 Terpenoid FPPS medium pass
OBART08G14580.1 Terpenoid FPPS low borderline
OBART01G09360.1 Terpenoid GGPPS medium borderline
OBART05G27180.1 Terpenoid GGPPS medium borderline
OBART06G24680.1 Terpenoid GGPPS medium borderline
OBART07G19970.1 Terpenoid GGPPS medium borderline
OBART08G05430.1 Terpenoid GGPPS medium borderline
OBART08G05430.2 Terpenoid GGPPS medium borderline
OBART08G05430.3 Terpenoid GGPPS medium borderline
OBART08G05430.4 Terpenoid GGPPS medium borderline
OBART12G08060.1 Terpenoid GGPPS medium borderline
OBART03G33030.1 Terpenoid HDR/IspH high pass
OBART03G33040.1 Terpenoid HDR/IspH high pass
OBART02G23230.1 Terpenoid HDS/IspG high pass
OBART02G23230.2 Terpenoid HDS/IspG high pass
OBART02G30030.1 Terpenoid HMGR medium pass