PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OBART11G20910.1 Phenylpropanoid LAC medium pass
OBART11G20930.1 Phenylpropanoid LAC medium pass
OBART11G23830.1 Phenylpropanoid LAC medium pass
OBART12G00340.1 Phenylpropanoid LAC medium pass
OBART12G07500.1 Phenylpropanoid LAC medium pass
OBART12G07530.1 Phenylpropanoid LAC medium pass
OBART12G07530.2 Phenylpropanoid LAC medium pass
OBART12G07600.1 Phenylpropanoid LAC medium pass
OBART02G24730.1 Phenylpropanoid PAL high pass
OBART02G24760.1 Phenylpropanoid PAL high pass
OBART02G24770.1 Phenylpropanoid PAL high pass
OBART02G24780.1 Phenylpropanoid PAL high pass
OBART04G18850.1 Phenylpropanoid PAL high pass
OBART04G18860.1 Phenylpropanoid PAL low borderline
OBART04G18870.1 Phenylpropanoid PAL high pass
OBART05G03560.1 Phenylpropanoid PAL low borderline
OBART05G17310.1 Phenylpropanoid PAL medium pass
OBART08G10040.1 Phenylpropanoid PAL low borderline
OBART12G13980.1 Phenylpropanoid PAL medium pass
OBART12G14000.1 Phenylpropanoid PAL high pass
OBART01G06320.1 Phenylpropanoid POD medium pass
OBART01G06770.1 Phenylpropanoid POD medium pass
OBART01G10490.1 Phenylpropanoid POD medium pass
OBART01G10750.1 Phenylpropanoid POD medium pass
OBART01G11010.1 Phenylpropanoid POD medium pass
OBART01G11010.2 Phenylpropanoid POD medium pass
OBART01G11010.3 Phenylpropanoid POD medium pass
OBART01G11010.4 Phenylpropanoid POD medium pass
OBART01G12310.1 Phenylpropanoid POD low borderline
OBART01G12330.1 Phenylpropanoid POD low borderline
OBART01G16000.1 Phenylpropanoid POD medium pass
OBART01G18800.1 Phenylpropanoid POD medium pass
OBART01G26320.1 Phenylpropanoid POD medium pass
OBART01G28600.1 Phenylpropanoid POD medium pass
OBART01G34060.1 Phenylpropanoid POD low borderline
OBART01G44780.1 Phenylpropanoid POD medium pass
OBART01G44790.1 Phenylpropanoid POD low borderline
OBART02G04710.1 Phenylpropanoid POD medium pass
OBART02G05300.1 Phenylpropanoid POD medium pass
OBART02G07050.1 Phenylpropanoid POD medium pass
OBART02G10040.1 Phenylpropanoid POD low borderline
OBART02G10140.1 Phenylpropanoid POD medium pass
OBART02G19450.1 Phenylpropanoid POD low borderline
OBART02G19450.2 Phenylpropanoid POD low borderline
OBART02G20300.1 Phenylpropanoid POD medium pass
OBART02G26930.1 Phenylpropanoid POD medium pass
OBART02G27460.1 Phenylpropanoid POD medium pass
OBART02G38350.1 Phenylpropanoid POD medium pass
OBART02G38350.2 Phenylpropanoid POD medium pass
OBART03G01690.1 Phenylpropanoid POD medium pass