PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OBART04G17650.1 Phenylpropanoid HCT medium pass
OBART04G24760.1 Phenylpropanoid HCT low borderline
OBART05G01220.1 Phenylpropanoid HCT medium pass
OBART05G02780.1 Phenylpropanoid HCT low borderline
OBART06G05510.1 Phenylpropanoid HCT medium pass
OBART06G05530.1 Phenylpropanoid HCT low borderline
OBART06G05550.1 Phenylpropanoid HCT low borderline
OBART07G02630.1 Phenylpropanoid HCT low borderline
OBART07G18100.1 Phenylpropanoid HCT low borderline
OBART08G05920.1 Phenylpropanoid HCT medium pass
OBART08G22300.1 Phenylpropanoid HCT medium pass
OBART08G22310.1 Phenylpropanoid HCT medium pass
OBART09G10620.1 Phenylpropanoid HCT medium pass
OBART10G00400.1 Phenylpropanoid HCT low borderline
OBART10G00970.1 Phenylpropanoid HCT low borderline
OBART10G00980.1 Phenylpropanoid HCT low borderline
OBART10G04810.1 Phenylpropanoid HCT low borderline
OBART10G14930.1 Phenylpropanoid HCT low borderline
OBART11G05020.1 Phenylpropanoid HCT medium pass
OBART11G14540.1 Phenylpropanoid HCT medium pass
OBART12G11370.1 Phenylpropanoid HCT low borderline
OBART12G11430.1 Phenylpropanoid HCT medium pass
OBART01G15850.1 Phenylpropanoid LAC medium pass
OBART01G23820.1 Phenylpropanoid LAC medium pass
OBART01G35060.1 Phenylpropanoid LAC low borderline
OBART01G35810.1 Phenylpropanoid LAC medium pass
OBART01G36820.1 Phenylpropanoid LAC medium pass
OBART01G36830.1 Phenylpropanoid LAC medium pass
OBART01G36970.1 Phenylpropanoid LAC medium pass
OBART01G37400.1 Phenylpropanoid LAC low borderline
OBART01G37400.2 Phenylpropanoid LAC medium pass
OBART02G32600.1 Phenylpropanoid LAC medium pass
OBART03G12210.1 Phenylpropanoid LAC medium pass
OBART03G13980.1 Phenylpropanoid LAC medium pass
OBART04G21620.1 Phenylpropanoid LAC low borderline
OBART05G19160.1 Phenylpropanoid LAC medium pass
OBART05G19180.1 Phenylpropanoid LAC medium pass
OBART06G00250.1 Phenylpropanoid LAC low borderline
OBART06G18860.1 Phenylpropanoid LAC medium pass
OBART06G18870.1 Phenylpropanoid LAC low borderline
OBART06G18870.2 Phenylpropanoid LAC low borderline
OBART07G00080.1 Phenylpropanoid LAC medium pass
OBART07G01340.1 Phenylpropanoid LAC low borderline
OBART08G03240.1 Phenylpropanoid LAC low borderline
OBART09G07710.1 Phenylpropanoid LAC medium pass
OBART09G15770.1 Phenylpropanoid LAC medium borderline
OBART10G06740.1 Phenylpropanoid LAC medium pass
OBART10G11090.1 Phenylpropanoid LAC low borderline
OBART11G00530.1 Phenylpropanoid LAC low borderline
OBART11G08980.1 Phenylpropanoid LAC medium pass