PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OBART07G18960.1 Phenylpropanoid CSE medium pass
OBART08G02110.1 Phenylpropanoid CSE medium pass
OBART08G23320.1 Phenylpropanoid CSE medium pass
OBART09G11840.1 Phenylpropanoid CSE medium pass
OBART09G11840.2 Phenylpropanoid CSE medium pass
OBART09G15180.1 Phenylpropanoid CSE medium pass
OBART09G19680.1 Phenylpropanoid CSE medium pass
OBART09G19810.1 Phenylpropanoid CSE medium pass
OBART09G19820.1 Phenylpropanoid CSE medium pass
OBART09G19830.1 Phenylpropanoid CSE low borderline
OBART09G19850.1 Phenylpropanoid CSE medium pass
OBART11G08490.1 Phenylpropanoid CSE medium pass
OBART12G05760.1 Phenylpropanoid CSE medium pass
OBART12G08240.1 Phenylpropanoid CSE medium pass
OBART01G07980.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART01G08000.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART01G08010.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART01G14730.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART01G44410.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART02G06380.2 Phenylpropanoid F5H/CYP84A medium borderline
OBART02G06490.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART03G23580.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART03G24910.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART03G41040.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART04G16250.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART04G20190.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART06G11550.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART06G15950.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART06G22330.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART06G22330.2 Phenylpropanoid F5H/CYP84A medium borderline
OBART06G22410.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART06G24350.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART07G07320.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART08G00430.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART08G01970.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART09G11780.1 Phenylpropanoid F5H/CYP84A medium pass
OBART10G04360.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART10G06900.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART11G13010.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART11G15310.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART12G20240.1 Phenylpropanoid F5H/CYP84A medium borderline
OBART01G00390.1 Phenylpropanoid HCT medium pass
OBART01G05110.1 Phenylpropanoid HCT low borderline
OBART01G05570.1 Phenylpropanoid HCT low borderline
OBART01G14720.1 Phenylpropanoid HCT medium pass
OBART01G16160.1 Phenylpropanoid HCT medium pass
OBART01G22700.1 Phenylpropanoid HCT low borderline
OBART01G42340.1 Phenylpropanoid HCT low borderline
OBART02G00070.1 Phenylpropanoid HCT low borderline
OBART02G23830.1 Phenylpropanoid HCT medium pass