PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
OBART12G02670.3 Flavonoid 4CL low borderline
OBART12G04160.1 Flavonoid 4CL medium pass
OBART12G04160.2 Flavonoid 4CL medium pass
OBART01G01780.1 Flavonoid ANR medium borderline
OBART01G18290.1 Flavonoid ANR high pass
OBART01G23740.1 Flavonoid ANR medium borderline
OBART01G24080.1 Flavonoid ANR low borderline
OBART01G35850.1 Flavonoid ANR medium borderline
OBART01G45960.1 Flavonoid ANR low borderline
OBART02G06130.1 Flavonoid ANR low borderline
OBART02G06130.2 Flavonoid ANR low borderline
OBART03G20890.1 Flavonoid ANR low borderline
OBART04G24800.1 Flavonoid ANR medium borderline
OBART04G24800.2 Flavonoid ANR medium borderline
OBART04G24800.3 Flavonoid ANR medium borderline
OBART04G24800.4 Flavonoid ANR medium borderline
OBART04G24820.1 Flavonoid ANR medium borderline
OBART04G26860.1 Flavonoid ANR medium borderline
OBART04G26870.1 Flavonoid ANR medium borderline
OBART04G26880.1 Flavonoid ANR medium borderline
OBART04G26880.2 Flavonoid ANR medium borderline
OBART05G26910.1 Flavonoid ANR low borderline
OBART06G21360.1 Flavonoid ANR medium borderline
OBART06G23020.1 Flavonoid ANR medium pass
OBART06G23020.2 Flavonoid ANR medium pass
OBART06G25020.1 Flavonoid ANR medium borderline
OBART07G20990.1 Flavonoid ANR medium pass
OBART07G21230.1 Flavonoid ANR medium borderline
OBART07G21240.1 Flavonoid ANR medium borderline
OBART07G21270.1 Flavonoid ANR medium borderline
OBART07G21280.1 Flavonoid ANR low borderline
OBART07G21280.2 Flavonoid ANR medium pass
OBART08G04960.1 Flavonoid ANR medium borderline
OBART08G04960.2 Flavonoid ANR medium borderline
OBART08G04960.3 Flavonoid ANR medium borderline
OBART08G16180.1 Flavonoid ANR medium borderline
OBART09G10420.1 Flavonoid ANR medium borderline
OBART10G13250.1 Flavonoid ANR medium borderline
OBART10G19520.1 Flavonoid ANR low borderline
OBART11G09130.1 Flavonoid ANR low borderline
OBART02G14380.1 Flavonoid ANS/LDOX medium borderline
OBART05G03380.1 Flavonoid ANS/LDOX medium borderline
OBART06G05010.1 Flavonoid ANS/LDOX medium borderline
OBART06G05020.1 Flavonoid ANS/LDOX medium borderline
OBART06G05020.2 Flavonoid ANS/LDOX medium borderline
OBART06G05020.3 Flavonoid ANS/LDOX medium borderline
OBART09G07060.1 Flavonoid ANS/LDOX medium borderline
OBART10G05300.1 Flavonoid ANS/LDOX low borderline
OBART01G27780.1 Flavonoid C4H low borderline
OBART01G27810.1 Flavonoid C4H medium borderline