PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
OBART01G35270.1 Flavonoid C4H medium borderline
OBART02G14460.1 Flavonoid C4H low borderline
OBART05G11670.1 Flavonoid C4H medium pass
OBART06G17740.1 Flavonoid C4H low borderline
OBART06G19000.2 Flavonoid C4H medium borderline
OBART07G24320.1 Flavonoid C4H low borderline
OBART08G11790.1 Flavonoid C4H low borderline
OBART08G11790.2 Flavonoid C4H low borderline
OBART10G15630.1 Flavonoid C4H medium borderline
OBART10G15650.1 Flavonoid C4H medium borderline
OBART10G15660.1 Flavonoid C4H medium borderline
OBART03G38990.1 Flavonoid CHI medium pass
OBART04G12920.1 Flavonoid CHI low borderline
OBART06G06510.1 Flavonoid CHI low borderline
OBART11G01040.1 Flavonoid CHI medium pass
OBART11G01040.2 Flavonoid CHI medium pass
OBART11G01040.3 Flavonoid CHI medium pass
OBART12G00770.1 Flavonoid CHI medium pass
OBART12G00770.2 Flavonoid CHI medium pass
OBART12G00770.3 Flavonoid CHI medium pass
OBART01G10740.1 Flavonoid CHS low borderline
OBART01G10740.2 Flavonoid CHS low borderline
OBART01G21850.1 Flavonoid CHS low borderline
OBART01G21860.1 Flavonoid CHS medium pass
OBART03G29130.1 Flavonoid CHS medium pass
OBART04G09280.1 Flavonoid CHS medium pass
OBART05G07150.1 Flavonoid CHS medium pass
OBART05G07160.1 Flavonoid CHS medium pass
OBART05G07190.1 Flavonoid CHS medium pass
OBART05G21530.1 Flavonoid CHS medium pass
OBART07G09740.1 Flavonoid CHS medium pass
OBART07G11360.1 Flavonoid CHS medium pass
OBART07G15320.1 Flavonoid CHS medium pass
OBART07G15330.1 Flavonoid CHS medium pass
OBART07G16740.1 Flavonoid CHS medium pass
OBART07G16760.1 Flavonoid CHS low borderline
OBART07G16790.1 Flavonoid CHS medium pass
OBART10G02820.1 Flavonoid CHS medium pass
OBART10G03220.1 Flavonoid CHS medium pass
OBART10G03230.1 Flavonoid CHS medium pass
OBART10G03630.1 Flavonoid CHS medium pass
OBART10G03660.1 Flavonoid CHS medium pass
OBART10G04030.1 Flavonoid CHS medium pass
OBART10G13730.1 Flavonoid CHS medium pass
OBART11G15600.1 Flavonoid CHS medium pass
OBART11G15620.1 Flavonoid CHS medium pass
OBART11G15630.1 Flavonoid CHS medium pass
OBART11G15640.1 Flavonoid CHS medium pass
OBART11G15650.1 Flavonoid CHS medium pass
OBART11G15670.1 Flavonoid CHS medium pass