PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
OBART02G08790.1 Rosmarinic Acid C4H low borderline
OBART02G09090.1 Rosmarinic Acid C4H low borderline
OBART02G12230.1 Rosmarinic Acid C4H low borderline
OBART02G12230.2 Rosmarinic Acid C4H low borderline
OBART02G12230.3 Rosmarinic Acid C4H low borderline
OBART02G14460.1 Rosmarinic Acid C4H low borderline
OBART02G14940.1 Rosmarinic Acid C4H medium pass
OBART02G16220.1 Rosmarinic Acid C4H medium pass
OBART02G16230.1 Rosmarinic Acid C4H medium pass
OBART02G17500.1 Rosmarinic Acid C4H low borderline
OBART02G17540.1 Rosmarinic Acid C4H low borderline
OBART02G17550.1 Rosmarinic Acid C4H medium pass
OBART02G17560.1 Rosmarinic Acid C4H medium pass
OBART02G18970.1 Rosmarinic Acid C4H low borderline
OBART02G21170.1 Rosmarinic Acid C4H medium pass
OBART02G21200.1 Rosmarinic Acid C4H low borderline
OBART02G21240.1 Rosmarinic Acid C4H medium pass
OBART02G21260.1 Rosmarinic Acid C4H low borderline
OBART02G21270.1 Rosmarinic Acid C4H low borderline
OBART02G21340.1 Rosmarinic Acid C4H low borderline
OBART02G23050.1 Rosmarinic Acid C4H low borderline
OBART02G29320.1 Rosmarinic Acid C4H low borderline
OBART03G00990.1 Rosmarinic Acid C4H low borderline
OBART03G02740.1 Rosmarinic Acid C4H medium pass
OBART03G03130.1 Rosmarinic Acid C4H low borderline
OBART03G05120.1 Rosmarinic Acid C4H low borderline
OBART03G09250.1 Rosmarinic Acid C4H low borderline
OBART03G10580.1 Rosmarinic Acid C4H low borderline
OBART03G10590.1 Rosmarinic Acid C4H medium pass
OBART03G10680.1 Rosmarinic Acid C4H medium pass
OBART03G16200.1 Rosmarinic Acid C4H low borderline
OBART03G16200.2 Rosmarinic Acid C4H low borderline
OBART03G18460.1 Rosmarinic Acid C4H low borderline
OBART03G22840.1 Rosmarinic Acid C4H low borderline
OBART03G23480.1 Rosmarinic Acid C4H low borderline
OBART03G23580.1 Rosmarinic Acid C4H low borderline
OBART03G24910.1 Rosmarinic Acid C4H low borderline
OBART03G25000.1 Rosmarinic Acid C4H low borderline
OBART03G25030.1 Rosmarinic Acid C4H medium pass
OBART03G27760.1 Rosmarinic Acid C4H medium pass
OBART03G33640.1 Rosmarinic Acid C4H low borderline
OBART03G34950.1 Rosmarinic Acid C4H low borderline
OBART03G34950.2 Rosmarinic Acid C4H medium pass
OBART03G34950.4 Rosmarinic Acid C4H medium pass
OBART03G40080.1 Rosmarinic Acid C4H low borderline
OBART03G41040.1 Rosmarinic Acid C4H low borderline
OBART04G00070.1 Rosmarinic Acid C4H medium pass
OBART04G01300.1 Rosmarinic Acid C4H low borderline
OBART04G02550.1 Rosmarinic Acid C4H low borderline
OBART04G02570.1 Rosmarinic Acid C4H low borderline