PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
OBART04G02620.1 Rosmarinic Acid C4H low borderline
OBART04G02870.1 Rosmarinic Acid C4H low borderline
OBART04G02940.1 Rosmarinic Acid C4H low borderline
OBART04G05400.1 Rosmarinic Acid C4H low borderline
OBART04G11620.1 Rosmarinic Acid C4H low borderline
OBART04G15600.1 Rosmarinic Acid C4H low borderline
OBART04G16250.1 Rosmarinic Acid C4H low borderline
OBART04G16260.1 Rosmarinic Acid C4H low borderline
OBART04G20190.1 Rosmarinic Acid C4H low borderline
OBART04G22350.1 Rosmarinic Acid C4H low borderline
OBART05G00110.1 Rosmarinic Acid C4H low borderline
OBART05G05430.1 Rosmarinic Acid C4H low borderline
OBART05G06410.1 Rosmarinic Acid C4H low borderline
OBART05G11670.1 Rosmarinic Acid C4H medium pass
OBART05G13350.1 Rosmarinic Acid C4H low borderline
OBART05G14110.1 Rosmarinic Acid C4H low borderline
OBART05G16020.1 Rosmarinic Acid C4H low borderline
OBART05G16020.2 Rosmarinic Acid C4H low borderline
OBART05G16030.1 Rosmarinic Acid C4H low borderline
OBART05G16580.1 Rosmarinic Acid C4H low borderline
OBART05G17120.1 Rosmarinic Acid C4H medium pass
OBART05G20560.1 Rosmarinic Acid C4H low borderline
OBART05G21360.1 Rosmarinic Acid C4H medium pass
OBART05G22660.1 Rosmarinic Acid C4H medium pass
OBART06G00070.1 Rosmarinic Acid C4H medium pass
OBART06G00620.1 Rosmarinic Acid C4H low borderline
OBART06G01780.1 Rosmarinic Acid C4H low borderline
OBART06G05840.1 Rosmarinic Acid C4H low borderline
OBART06G05850.1 Rosmarinic Acid C4H low borderline
OBART06G06570.1 Rosmarinic Acid C4H medium pass
OBART06G10230.1 Rosmarinic Acid C4H low borderline
OBART06G11550.1 Rosmarinic Acid C4H low borderline
OBART06G12960.1 Rosmarinic Acid C4H medium pass
OBART06G13110.1 Rosmarinic Acid C4H medium pass
OBART06G14120.1 Rosmarinic Acid C4H low borderline
OBART06G15950.1 Rosmarinic Acid C4H medium pass
OBART06G16210.1 Rosmarinic Acid C4H low borderline
OBART06G17740.1 Rosmarinic Acid C4H low borderline
OBART06G18780.1 Rosmarinic Acid C4H low borderline
OBART06G18930.1 Rosmarinic Acid C4H low borderline
OBART06G18930.2 Rosmarinic Acid C4H low borderline
OBART06G18950.1 Rosmarinic Acid C4H low borderline
OBART06G18970.1 Rosmarinic Acid C4H low borderline
OBART06G18990.1 Rosmarinic Acid C4H low borderline
OBART06G19000.1 Rosmarinic Acid C4H low borderline
OBART06G19000.2 Rosmarinic Acid C4H low borderline
OBART06G20970.1 Rosmarinic Acid C4H medium pass
OBART06G21840.1 Rosmarinic Acid C4H low borderline
OBART06G22330.1 Rosmarinic Acid C4H low borderline
OBART06G22330.2 Rosmarinic Acid C4H low borderline