PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
OBART06G22350.1 Rosmarinic Acid C4H low borderline
OBART06G22380.1 Rosmarinic Acid C4H low borderline
OBART06G22380.2 Rosmarinic Acid C4H medium pass
OBART06G22390.1 Rosmarinic Acid C4H medium pass
OBART06G22400.1 Rosmarinic Acid C4H medium pass
OBART06G22410.1 Rosmarinic Acid C4H low borderline
OBART06G22430.1 Rosmarinic Acid C4H medium pass
OBART06G22440.1 Rosmarinic Acid C4H low borderline
OBART06G24350.1 Rosmarinic Acid C4H medium pass
OBART07G07310.1 Rosmarinic Acid C4H low borderline
OBART07G07320.1 Rosmarinic Acid C4H low borderline
OBART07G07340.1 Rosmarinic Acid C4H medium pass
OBART07G10620.1 Rosmarinic Acid C4H medium pass
OBART07G10640.1 Rosmarinic Acid C4H low borderline
OBART07G10670.1 Rosmarinic Acid C4H low borderline
OBART07G11730.1 Rosmarinic Acid C4H low borderline
OBART07G11790.1 Rosmarinic Acid C4H low borderline
OBART07G12970.1 Rosmarinic Acid C4H low borderline
OBART07G12980.1 Rosmarinic Acid C4H low borderline
OBART07G13570.1 Rosmarinic Acid C4H low borderline
OBART07G14860.1 Rosmarinic Acid C4H low borderline
OBART07G16320.1 Rosmarinic Acid C4H low borderline
OBART07G16370.1 Rosmarinic Acid C4H low borderline
OBART07G16380.1 Rosmarinic Acid C4H low borderline
OBART07G16380.2 Rosmarinic Acid C4H low borderline
OBART07G16400.1 Rosmarinic Acid C4H low borderline
OBART07G16400.2 Rosmarinic Acid C4H low borderline
OBART07G16400.3 Rosmarinic Acid C4H low borderline
OBART07G21420.1 Rosmarinic Acid C4H medium pass
OBART07G23430.1 Rosmarinic Acid C4H low borderline
OBART07G23430.2 Rosmarinic Acid C4H low borderline
OBART07G24110.1 Rosmarinic Acid C4H low borderline
OBART07G24320.1 Rosmarinic Acid C4H low borderline
OBART07G26500.1 Rosmarinic Acid C4H low borderline
OBART08G00400.1 Rosmarinic Acid C4H low borderline
OBART08G00410.1 Rosmarinic Acid C4H medium pass
OBART08G00420.1 Rosmarinic Acid C4H medium pass
OBART08G00430.1 Rosmarinic Acid C4H medium pass
OBART08G00450.1 Rosmarinic Acid C4H medium pass
OBART08G00470.1 Rosmarinic Acid C4H medium pass
OBART08G01970.1 Rosmarinic Acid C4H low borderline
OBART08G03080.1 Rosmarinic Acid C4H low borderline
OBART08G06550.1 Rosmarinic Acid C4H medium pass
OBART08G08130.1 Rosmarinic Acid C4H low borderline
OBART08G08160.1 Rosmarinic Acid C4H low borderline
OBART08G11790.1 Rosmarinic Acid C4H low borderline
OBART08G11790.2 Rosmarinic Acid C4H low borderline
OBART08G15450.1 Rosmarinic Acid C4H low borderline
OBART08G17080.1 Rosmarinic Acid C4H medium pass
OBART08G17500.1 Rosmarinic Acid C4H medium pass