PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
OBART07G08450.1 Alkaloid 7DLGT low borderline
OBART07G08470.1 Alkaloid 7DLGT medium pass
OBART07G08560.1 Alkaloid 7DLGT medium pass
OBART07G08930.1 Alkaloid 7DLGT medium pass
OBART07G14600.1 Alkaloid 7DLGT medium pass
OBART07G14610.1 Alkaloid 7DLGT high pass
OBART07G14720.1 Alkaloid 7DLGT medium pass
OBART07G14740.1 Alkaloid 7DLGT medium pass
OBART07G15400.1 Alkaloid 7DLGT medium pass
OBART07G15430.1 Alkaloid 7DLGT medium pass
OBART07G15440.1 Alkaloid 7DLGT medium pass
OBART07G15470.1 Alkaloid 7DLGT low borderline
OBART07G15590.1 Alkaloid 7DLGT low borderline
OBART07G18840.1 Alkaloid 7DLGT low borderline
OBART07G22670.1 Alkaloid 7DLGT low borderline
OBART07G25220.1 Alkaloid 7DLGT low borderline
OBART07G25970.1 Alkaloid 7DLGT low borderline
OBART08G04180.1 Alkaloid 7DLGT medium pass
OBART08G07730.1 Alkaloid 7DLGT low borderline
OBART08G11440.1 Alkaloid 7DLGT low borderline
OBART09G00950.1 Alkaloid 7DLGT medium pass
OBART09G01530.1 Alkaloid 7DLGT low borderline
OBART09G03880.1 Alkaloid 7DLGT low borderline
OBART09G05710.1 Alkaloid 7DLGT low borderline
OBART09G05740.1 Alkaloid 7DLGT low borderline
OBART09G09420.1 Alkaloid 7DLGT low borderline
OBART09G14380.1 Alkaloid 7DLGT low borderline
OBART09G14390.1 Alkaloid 7DLGT medium pass
OBART09G16560.1 Alkaloid 7DLGT low borderline
OBART09G16560.2 Alkaloid 7DLGT low borderline
OBART10G00960.1 Alkaloid 7DLGT low borderline
OBART10G03260.1 Alkaloid 7DLGT medium pass
OBART10G04850.1 Alkaloid 7DLGT medium pass
OBART10G05640.1 Alkaloid 7DLGT medium pass
OBART10G06090.1 Alkaloid 7DLGT low borderline
OBART11G02810.1 Alkaloid 7DLGT low borderline
OBART11G02820.1 Alkaloid 7DLGT low borderline
OBART11G12060.1 Alkaloid 7DLGT high pass
OBART11G12180.1 Alkaloid 7DLGT medium pass
OBART11G12720.1 Alkaloid 7DLGT low borderline
OBART11G12870.1 Alkaloid 7DLGT low borderline
OBART11G18960.1 Alkaloid 7DLGT medium pass
OBART12G15810.1 Alkaloid 7DLGT medium pass
OBART12G16940.1 Alkaloid 7DLGT low borderline
OBART01G21840.3 Alkaloid 7DLH low borderline
OBART01G23470.1 Alkaloid 7DLH medium borderline
OBART03G18910.1 Alkaloid 7DLH medium borderline
OBART05G14110.1 Alkaloid 7DLH medium borderline
OBART07G24110.1 Alkaloid 7DLH low borderline
OBART10G06270.1 Alkaloid 7DLH low borderline