PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OBART11G01230.1 Alkaloid 7DLH medium borderline
OBART11G02310.1 Alkaloid 7DLH low borderline
OBART11G13530.1 Alkaloid 7DLH low borderline
OBART12G01000.3 Alkaloid 7DLH medium borderline
OBART12G02050.1 Alkaloid 7DLH medium borderline
OBART02G25330.1 Alkaloid 8HGO medium borderline
OBART02G25330.2 Alkaloid 8HGO medium pass
OBART02G37160.1 Alkaloid 8HGO medium borderline
OBART03G06510.1 Alkaloid 8HGO medium borderline
OBART03G06510.2 Alkaloid 8HGO medium borderline
OBART03G06510.3 Alkaloid 8HGO medium borderline
OBART03G06520.1 Alkaloid 8HGO medium borderline
OBART03G06520.2 Alkaloid 8HGO medium borderline
OBART03G06520.3 Alkaloid 8HGO medium borderline
OBART03G08320.1 Alkaloid 8HGO low borderline
OBART03G11730.1 Alkaloid 8HGO low borderline
OBART07G17430.1 Alkaloid 8HGO low borderline
OBART07G17450.1 Alkaloid 8HGO low borderline
OBART07G17490.1 Alkaloid 8HGO low borderline
OBART07G17500.1 Alkaloid 8HGO low borderline
OBART07G22630.1 Alkaloid 8HGO medium borderline
OBART07G22630.2 Alkaloid 8HGO medium borderline
OBART10G03900.1 Alkaloid 8HGO medium borderline
OBART10G15470.1 Alkaloid 8HGO low borderline
OBART11G06350.1 Alkaloid 8HGO medium borderline
OBART11G06360.1 Alkaloid 8HGO medium borderline
OBART11G06370.1 Alkaloid 8HGO medium borderline
OBART01G29100.1 Alkaloid ADC low borderline
OBART03G26620.1 Alkaloid ADC low borderline
OBART04G00340.1 Alkaloid ADC medium pass
OBART06G01930.1 Alkaloid ADC medium pass
OBART08G15660.1 Alkaloid ADC medium pass
OBART08G16390.1 Alkaloid ADC low borderline
OBART01G16240.1 Alkaloid BBE medium borderline
OBART01G22780.1 Alkaloid BBE medium borderline
OBART02G09990.1 Alkaloid BBE medium borderline
OBART02G31570.1 Alkaloid BBE low borderline
OBART06G17910.1 Alkaloid BBE low borderline
OBART06G17920.1 Alkaloid BBE medium borderline
OBART06G17940.1 Alkaloid BBE medium borderline
OBART06G17950.1 Alkaloid BBE low borderline
OBART06G17960.1 Alkaloid BBE medium borderline
OBART06G17990.1 Alkaloid BBE medium borderline
OBART07G04000.1 Alkaloid BBE low borderline
OBART08G02330.1 Alkaloid BBE low borderline
OBART08G03470.1 Alkaloid BBE medium borderline
OBART08G03480.1 Alkaloid BBE medium borderline
OBART08G03490.1 Alkaloid BBE medium borderline
OBART10G07230.1 Alkaloid BBE medium borderline
OBART11G14210.1 Alkaloid BBE medium borderline