PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OBART01G01370.1 Alkaloid CNMT low borderline
OBART01G18710.1 Alkaloid CNMT low borderline
OBART01G18710.2 Alkaloid CNMT low borderline
OBART01G18710.3 Alkaloid CNMT low borderline
OBART06G03470.1 Alkaloid CNMT low borderline
OBART06G03470.2 Alkaloid CNMT low borderline
OBART06G19150.1 Alkaloid CNMT medium borderline
OBART07G05030.1 Alkaloid CNMT low borderline
OBART07G11500.1 Alkaloid CNMT low borderline
OBART11G17050.1 Alkaloid CNMT low borderline
OBART11G17050.2 Alkaloid CNMT low borderline
OBART12G07850.1 Alkaloid CNMT medium pass
OBART12G07850.2 Alkaloid CNMT medium pass
OBART12G18810.1 Alkaloid CNMT low borderline
OBART01G14850.1 Alkaloid CODM/T6ODM medium borderline
OBART01G15720.1 Alkaloid CODM/T6ODM medium borderline
OBART01G18730.1 Alkaloid CODM/T6ODM medium borderline
OBART01G20550.1 Alkaloid CODM/T6ODM medium borderline
OBART01G20560.1 Alkaloid CODM/T6ODM medium borderline
OBART02G12330.1 Alkaloid CODM/T6ODM medium borderline
OBART02G12330.2 Alkaloid CODM/T6ODM medium borderline
OBART02G14380.1 Alkaloid CODM/T6ODM medium borderline
OBART02G16340.1 Alkaloid CODM/T6ODM low borderline
OBART02G16340.2 Alkaloid CODM/T6ODM low borderline
OBART02G24970.1 Alkaloid CODM/T6ODM medium borderline
OBART02G33830.1 Alkaloid CODM/T6ODM medium borderline
OBART03G01760.1 Alkaloid CODM/T6ODM medium borderline
OBART03G06870.1 Alkaloid CODM/T6ODM low borderline
OBART03G13450.1 Alkaloid CODM/T6ODM medium borderline
OBART03G26200.1 Alkaloid CODM/T6ODM medium borderline
OBART03G41580.1 Alkaloid CODM/T6ODM medium borderline
OBART03G41820.1 Alkaloid CODM/T6ODM medium borderline
OBART04G03070.1 Alkaloid CODM/T6ODM low borderline
OBART04G19030.1 Alkaloid CODM/T6ODM medium borderline
OBART04G22840.1 Alkaloid CODM/T6ODM medium borderline
OBART05G03390.1 Alkaloid CODM/T6ODM medium borderline
OBART05G04100.1 Alkaloid CODM/T6ODM medium borderline
OBART05G05200.1 Alkaloid CODM/T6ODM medium borderline
OBART05G06920.1 Alkaloid CODM/T6ODM medium borderline
OBART05G09240.1 Alkaloid CODM/T6ODM medium pass
OBART05G25620.1 Alkaloid CODM/T6ODM medium borderline
OBART06G03510.1 Alkaloid CODM/T6ODM medium pass
OBART06G04140.1 Alkaloid CODM/T6ODM medium borderline
OBART06G05020.1 Alkaloid CODM/T6ODM medium borderline
OBART06G05020.2 Alkaloid CODM/T6ODM medium borderline
OBART06G05020.3 Alkaloid CODM/T6ODM medium borderline
OBART06G09690.1 Alkaloid CODM/T6ODM medium borderline
OBART06G19130.1 Alkaloid CODM/T6ODM medium borderline
OBART08G07160.1 Alkaloid CODM/T6ODM low borderline
OBART08G07640.1 Alkaloid CODM/T6ODM medium borderline