PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
OBART08G07640.2 Alkaloid CODM/T6ODM medium borderline
OBART08G18240.1 Alkaloid CODM/T6ODM low borderline
OBART08G18250.1 Alkaloid CODM/T6ODM medium borderline
OBART08G23590.1 Alkaloid CODM/T6ODM medium borderline
OBART09G07080.1 Alkaloid CODM/T6ODM medium borderline
OBART09G20280.1 Alkaloid CODM/T6ODM medium borderline
OBART10G16250.1 Alkaloid CODM/T6ODM medium borderline
OBART10G18350.1 Alkaloid CODM/T6ODM medium borderline
OBART01G37200.1 Alkaloid COR medium pass
OBART01G37200.2 Alkaloid COR medium pass
OBART01G37210.1 Alkaloid COR medium pass
OBART01G37220.1 Alkaloid COR medium pass
OBART02G01820.1 Alkaloid COR low borderline
OBART03G09810.1 Alkaloid COR medium pass
OBART04G01540.1 Alkaloid COR medium pass
OBART04G14170.1 Alkaloid COR medium pass
OBART04G14170.2 Alkaloid COR medium pass
OBART04G14170.3 Alkaloid COR medium pass
OBART04G14180.1 Alkaloid COR medium pass
OBART04G14190.1 Alkaloid COR medium pass
OBART05G19030.1 Alkaloid COR medium pass
OBART05G19040.1 Alkaloid COR medium pass
OBART05G20010.5 Alkaloid COR medium pass
OBART10G00570.1 Alkaloid COR medium pass
OBART10G00580.1 Alkaloid COR medium pass
OBART10G00600.1 Alkaloid COR medium pass
OBART10G00600.2 Alkaloid COR medium pass
OBART01G27780.1 Alkaloid CYP719 medium borderline
OBART02G09090.1 Alkaloid CYP719 medium borderline
OBART04G01300.1 Alkaloid CYP719 medium borderline
OBART04G15600.1 Alkaloid CYP719 medium borderline
OBART06G18950.1 Alkaloid CYP719 medium borderline
OBART06G21840.1 Alkaloid CYP719 medium borderline
OBART10G15630.1 Alkaloid CYP719 medium borderline
OBART10G15660.1 Alkaloid CYP719 medium borderline
OBART03G15050.1 Alkaloid CYP80B1 medium borderline
OBART03G23580.1 Alkaloid CYP80B1 medium borderline
OBART04G02570.1 Alkaloid CYP80B1 medium borderline
OBART04G02620.1 Alkaloid CYP80B1 medium borderline
OBART06G01560.1 Alkaloid CYP80B1 low borderline
OBART06G01560.2 Alkaloid CYP80B1 low borderline
OBART06G18930.1 Alkaloid CYP80B1 medium borderline
OBART06G18930.2 Alkaloid CYP80B1 medium borderline
OBART09G11780.1 Alkaloid CYP80B1 medium pass
OBART10G04820.1 Alkaloid CYP80B1 medium borderline
OBART11G20600.1 Alkaloid CYP80B1 low borderline
OBART02G00970.1 Alkaloid CYP80F1 medium borderline
OBART05G07060.1 Alkaloid CYP80F1 medium borderline
OBART05G16600.1 Alkaloid CYP80F1 medium borderline
OBART07G13570.1 Alkaloid CYP80F1 medium borderline