PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

2196
Candidate Protein Records
1727
Pathway-Level Records
4621
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
Reset
Protein/Isoform Record Pathway Family Confidence Status
OBART03G22670.1 Flavonoid F3H medium borderline
OBART03G22690.2 Flavonoid F3H low borderline
OBART03G26200.1 Flavonoid F3H medium borderline
OBART03G41540.1 Flavonoid F3H medium borderline
OBART03G41580.1 Flavonoid F3H medium pass
OBART03G41820.1 Flavonoid F3H medium borderline
OBART04G03070.1 Flavonoid F3H medium pass
OBART04G03080.1 Flavonoid F3H medium borderline
OBART04G11610.1 Flavonoid F3H low borderline
OBART04G19030.1 Flavonoid F3H medium borderline
OBART04G22830.1 Flavonoid F3H medium borderline
OBART04G22840.1 Flavonoid F3H medium borderline
OBART04G27120.1 Flavonoid F3H medium borderline
OBART04G28440.1 Flavonoid F3H medium borderline
OBART04G28770.1 Flavonoid F3H medium borderline
OBART04G28790.1 Flavonoid F3H medium borderline
OBART05G01970.1 Flavonoid F3H medium borderline
OBART05G03390.1 Flavonoid F3H medium borderline
OBART05G04100.1 Flavonoid F3H low borderline
OBART05G05200.1 Flavonoid F3H medium borderline
OBART05G06920.1 Flavonoid F3H medium borderline
OBART05G09240.1 Flavonoid F3H medium pass
OBART05G16950.1 Flavonoid F3H low borderline
OBART05G22620.1 Flavonoid F3H medium borderline
OBART05G25620.1 Flavonoid F3H low borderline
OBART06G04140.1 Flavonoid F3H medium borderline
OBART06G09690.1 Flavonoid F3H medium borderline
OBART06G19130.1 Flavonoid F3H medium borderline
OBART07G00270.1 Flavonoid F3H low borderline
OBART07G04400.1 Flavonoid F3H low borderline
OBART07G04410.1 Flavonoid F3H medium pass
OBART08G07640.1 Flavonoid F3H low borderline
OBART08G07640.2 Flavonoid F3H low borderline
OBART08G14770.1 Flavonoid F3H low borderline
OBART08G14770.2 Flavonoid F3H low borderline
OBART08G18240.1 Flavonoid F3H low borderline
OBART08G18250.1 Flavonoid F3H medium borderline
OBART08G23590.1 Flavonoid F3H medium borderline
OBART09G01930.1 Flavonoid F3H low borderline
OBART09G02060.1 Flavonoid F3H low borderline
OBART09G02060.2 Flavonoid F3H low borderline
OBART09G07030.1 Flavonoid F3H medium borderline
OBART09G07030.2 Flavonoid F3H low borderline
OBART09G07080.1 Flavonoid F3H medium borderline
OBART09G12350.1 Flavonoid F3H medium borderline
OBART09G12370.1 Flavonoid F3H medium borderline
OBART09G20280.1 Flavonoid F3H medium borderline
OBART10G16180.1 Flavonoid F3H low borderline
OBART10G16180.2 Flavonoid F3H low borderline
OBART10G16180.3 Flavonoid F3H low borderline