PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
ONIVA01G29700.1 Alkaloid 16OMT medium borderline
ONIVA01G35620.1 Alkaloid 16OMT medium borderline
ONIVA01G48910.1 Alkaloid 16OMT medium borderline
ONIVA01G48930.1 Alkaloid 16OMT medium borderline
ONIVA03G19100.1 Alkaloid 16OMT low borderline
ONIVA04G02960.1 Alkaloid 16OMT medium borderline
ONIVA04G07110.1 Alkaloid 16OMT medium borderline
ONIVA04G07770.3 Alkaloid 16OMT low borderline
ONIVA05G23640.1 Alkaloid 16OMT medium borderline
ONIVA05G23650.1 Alkaloid 16OMT low borderline
ONIVA06G12600.1 Alkaloid 16OMT medium borderline
ONIVA06G22040.1 Alkaloid 16OMT medium borderline
ONIVA07G11400.1 Alkaloid 16OMT medium borderline
ONIVA07G11480.1 Alkaloid 16OMT medium borderline
ONIVA07G11520.1 Alkaloid 16OMT medium borderline
ONIVA07G11530.1 Alkaloid 16OMT medium borderline
ONIVA07G15680.1 Alkaloid 16OMT medium borderline
ONIVA07G23860.1 Alkaloid 16OMT medium borderline
ONIVA08G03390.1 Alkaloid 16OMT medium borderline
ONIVA08G04110.1 Alkaloid 16OMT low borderline
ONIVA08G04110.2 Alkaloid 16OMT low borderline
ONIVA08G10370.1 Alkaloid 16OMT medium borderline
ONIVA08G13010.1 Alkaloid 16OMT medium borderline
ONIVA08G18680.1 Alkaloid 16OMT medium borderline
ONIVA09G05660.1 Alkaloid 16OMT medium borderline
ONIVA09G20770.1 Alkaloid 16OMT low borderline
ONIVA10G01310.1 Alkaloid 16OMT medium borderline
ONIVA10G01330.1 Alkaloid 16OMT medium borderline
ONIVA10G20510.1 Alkaloid 16OMT low borderline
ONIVA11G07790.1 Alkaloid 16OMT medium borderline
ONIVA11G10660.1 Alkaloid 16OMT medium borderline
ONIVA11G10720.1 Alkaloid 16OMT medium borderline
ONIVA11G10730.1 Alkaloid 16OMT medium borderline
ONIVA11G10750.1 Alkaloid 16OMT medium borderline
ONIVA11G15370.1 Alkaloid 16OMT medium borderline
ONIVA12G10730.1 Alkaloid 16OMT medium borderline
ONIVA11G10640.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
ONIVA01G05550.1 Alkaloid 7DLGT medium pass
ONIVA01G05570.1 Alkaloid 7DLGT low borderline
ONIVA01G05570.2 Alkaloid 7DLGT low borderline
ONIVA01G05570.3 Alkaloid 7DLGT high pass
ONIVA01G05820.1 Alkaloid 7DLGT low borderline
ONIVA01G07120.1 Alkaloid 7DLGT medium pass
ONIVA01G24800.1 Alkaloid 7DLGT low borderline
ONIVA01G27040.1 Alkaloid 7DLGT low borderline
ONIVA01G27080.1 Alkaloid 7DLGT low borderline
ONIVA01G30080.1 Alkaloid 7DLGT low borderline
ONIVA01G30100.1 Alkaloid 7DLGT low borderline
ONIVA01G30130.1 Alkaloid 7DLGT low borderline
ONIVA01G30140.1 Alkaloid 7DLGT low borderline