PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
ONIVA01G08400.1 Alkaloid GS high pass
ONIVA01G35600.1 Alkaloid GS low borderline
ONIVA02G08220.1 Alkaloid GS high pass
ONIVA02G17290.1 Alkaloid GS medium pass
ONIVA02G17290.2 Alkaloid GS medium pass
ONIVA02G23210.1 Alkaloid GS low borderline
ONIVA02G34940.1 Alkaloid GS medium pass
ONIVA02G34940.2 Alkaloid GS medium pass
ONIVA03G00200.1 Alkaloid GS low borderline
ONIVA03G00200.2 Alkaloid GS low borderline
ONIVA04G00310.1 Alkaloid GS low borderline
ONIVA04G03260.1 Alkaloid GS high pass
ONIVA04G07140.1 Alkaloid GS low borderline
ONIVA04G07180.1 Alkaloid GS low borderline
ONIVA04G24140.2 Alkaloid GS high pass
ONIVA05G11630.1 Alkaloid GS low borderline
ONIVA05G11630.2 Alkaloid GS low borderline
ONIVA06G01080.1 Alkaloid GS high pass
ONIVA06G01080.2 Alkaloid GS high pass
ONIVA06G18310.1 Alkaloid GS low borderline
ONIVA07G10220.1 Alkaloid GS high pass
ONIVA08G00640.1 Alkaloid GS medium pass
ONIVA08G00640.2 Alkaloid GS medium pass
ONIVA08G09220.1 Alkaloid GS high pass
ONIVA08G13730.1 Alkaloid GS low borderline
ONIVA08G25490.1 Alkaloid GS medium pass
ONIVA09G08480.1 Alkaloid GS medium pass
ONIVA09G08500.1 Alkaloid GS high pass
ONIVA09G08510.1 Alkaloid GS high pass
ONIVA09G08530.1 Alkaloid GS high pass
ONIVA09G08830.1 Alkaloid GS low borderline
ONIVA09G16570.1 Alkaloid GS low borderline
ONIVA09G16610.1 Alkaloid GS low borderline
ONIVA09G16610.2 Alkaloid GS low borderline
ONIVA09G18850.1 Alkaloid GS low borderline
ONIVA10G21030.1 Alkaloid GS low borderline
ONIVA10G21030.2 Alkaloid GS low borderline