PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
ONIVA01G00310.1 Alkaloid PMT low borderline
ONIVA01G05770.1 Alkaloid PMT medium pass
ONIVA01G14420.1 Alkaloid PMT medium pass
ONIVA01G25860.1 Alkaloid PMT medium pass
ONIVA01G25870.1 Alkaloid PMT medium pass
ONIVA01G48420.1 Alkaloid PMT low borderline
ONIVA02G11170.1 Alkaloid PMT medium pass
ONIVA02G12170.1 Alkaloid PMT medium borderline
ONIVA02G12170.2 Alkaloid PMT medium borderline
ONIVA03G31880.1 Alkaloid PMT low borderline
ONIVA04G02180.1 Alkaloid PMT medium pass
ONIVA04G02430.1 Alkaloid PMT medium pass
ONIVA04G02880.1 Alkaloid PMT medium pass
ONIVA05G01810.1 Alkaloid PMT low borderline
ONIVA05G02400.1 Alkaloid PMT medium pass
ONIVA05G05690.1 Alkaloid PMT medium pass
ONIVA05G10140.1 Alkaloid PMT medium pass
ONIVA06G15130.1 Alkaloid PMT low borderline
ONIVA06G15150.1 Alkaloid PMT low borderline
ONIVA06G15170.1 Alkaloid PMT low borderline
ONIVA06G20340.1 Alkaloid PMT medium borderline
ONIVA06G20340.2 Alkaloid PMT medium borderline
ONIVA06G23700.1 Alkaloid PMT medium pass
ONIVA06G23750.1 Alkaloid PMT medium pass
ONIVA06G23760.1 Alkaloid PMT medium pass
ONIVA06G25650.1 Alkaloid PMT medium pass
ONIVA06G28800.1 Alkaloid PMT low borderline
ONIVA06G28800.2 Alkaloid PMT low borderline
ONIVA06G29650.1 Alkaloid PMT medium pass
ONIVA07G03790.1 Alkaloid PMT low borderline
ONIVA07G09490.1 Alkaloid PMT medium borderline
ONIVA08G25350.1 Alkaloid PMT low borderline
ONIVA09G10320.1 Alkaloid PMT medium pass
ONIVA10G00670.1 Alkaloid PMT medium borderline
ONIVA10G00710.1 Alkaloid PMT medium pass
ONIVA10G00790.1 Alkaloid PMT medium pass
ONIVA10G01460.1 Alkaloid PMT medium pass
ONIVA10G16890.1 Alkaloid PMT medium pass
ONIVA11G05390.1 Alkaloid PMT medium pass