PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FNS
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Gene Pathway Family Confidence Status
ONIVA01G10280.1 Flavonoid FNS medium borderline
ONIVA01G10500.1 Flavonoid FNS low borderline
ONIVA01G21290.2 Flavonoid FNS medium borderline
ONIVA02G00730.1 Flavonoid FNS low borderline
ONIVA02G05880.1 Flavonoid FNS medium borderline
ONIVA02G15760.1 Flavonoid FNS medium borderline
ONIVA02G19110.1 Flavonoid FNS medium borderline
ONIVA02G19110.3 Flavonoid FNS medium borderline
ONIVA02G30540.1 Flavonoid FNS medium borderline
ONIVA03G36450.2 Flavonoid FNS medium borderline
ONIVA03G41980.1 Flavonoid FNS medium borderline
ONIVA04G01030.1 Flavonoid FNS medium borderline
ONIVA04G21710.1 Flavonoid FNS medium borderline
ONIVA05G05890.1 Flavonoid FNS medium borderline
ONIVA05G14050.1 Flavonoid FNS medium borderline
ONIVA05G17250.1 Flavonoid FNS medium borderline
ONIVA05G17260.1 Flavonoid FNS medium borderline
ONIVA05G20520.1 Flavonoid FNS medium borderline
ONIVA06G11940.1 Flavonoid FNS medium borderline
ONIVA06G12760.1 Flavonoid FNS medium borderline
ONIVA06G22530.1 Flavonoid FNS medium borderline
ONIVA06G22720.1 Flavonoid FNS medium borderline
ONIVA06G22720.2 Flavonoid FNS medium borderline
ONIVA06G22790.1 Flavonoid FNS medium borderline
ONIVA07G14760.1 Flavonoid FNS medium borderline
ONIVA07G17380.1 Flavonoid FNS medium borderline
ONIVA08G00390.1 Flavonoid FNS medium borderline
ONIVA09G06530.1 Flavonoid FNS low borderline
ONIVA10G04030.1 Flavonoid FNS low borderline
ONIVA10G04220.1 Flavonoid FNS medium borderline
ONIVA10G07870.2 Flavonoid FNS medium borderline
ONIVA11G03370.1 Flavonoid FNS medium borderline
ONIVA11G04930.1 Flavonoid FNS medium borderline
ONIVA11G14750.1 Flavonoid FNS medium borderline
ONIVA11G14750.2 Flavonoid FNS medium borderline