PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
ONIVA01G16710.1 Alkaloid H6H medium borderline
ONIVA01G34920.1 Alkaloid H6H low borderline
ONIVA01G40990.1 Alkaloid H6H low borderline
ONIVA01G41120.1 Alkaloid H6H medium borderline
ONIVA01G44440.1 Alkaloid H6H high pass
ONIVA01G49090.1 Alkaloid H6H medium borderline
ONIVA02G10660.1 Alkaloid H6H low borderline
ONIVA02G10660.2 Alkaloid H6H low borderline
ONIVA02G10660.3 Alkaloid H6H low borderline
ONIVA02G10660.4 Alkaloid H6H low borderline
ONIVA02G24950.1 Alkaloid H6H low borderline
ONIVA02G25090.1 Alkaloid H6H low borderline
ONIVA02G36190.2 Alkaloid H6H medium borderline
ONIVA03G18610.1 Alkaloid H6H low borderline
ONIVA03G18610.2 Alkaloid H6H low borderline
ONIVA03G18610.3 Alkaloid H6H low borderline
ONIVA03G24260.1 Alkaloid H6H medium borderline
ONIVA03G31500.1 Alkaloid H6H medium borderline
ONIVA03G44050.1 Alkaloid H6H medium borderline
ONIVA04G09570.1 Alkaloid H6H low borderline
ONIVA04G27000.1 Alkaloid H6H high pass
ONIVA05G03300.1 Alkaloid H6H medium pass
ONIVA05G07700.1 Alkaloid H6H low borderline
ONIVA05G23580.1 Alkaloid H6H low borderline
ONIVA05G28830.1 Alkaloid H6H low borderline
ONIVA06G05810.1 Alkaloid H6H medium borderline
ONIVA06G17130.1 Alkaloid H6H medium pass
ONIVA06G17180.1 Alkaloid H6H low borderline
ONIVA07G00050.1 Alkaloid H6H medium pass
ONIVA07G03060.1 Alkaloid H6H medium pass
ONIVA07G03070.1 Alkaloid H6H medium pass
ONIVA08G08590.1 Alkaloid H6H medium borderline
ONIVA08G08590.2 Alkaloid H6H medium borderline
ONIVA08G15690.1 Alkaloid H6H low borderline
ONIVA08G15690.2 Alkaloid H6H low borderline
ONIVA08G15690.3 Alkaloid H6H low borderline
ONIVA08G15690.4 Alkaloid H6H low borderline
ONIVA08G15690.5 Alkaloid H6H low borderline
ONIVA09G02020.1 Alkaloid H6H low borderline
ONIVA09G02230.1 Alkaloid H6H low borderline
ONIVA09G02230.2 Alkaloid H6H low borderline
ONIVA09G12260.1 Alkaloid H6H low borderline
ONIVA09G12930.1 Alkaloid H6H medium borderline
ONIVA10G18700.1 Alkaloid H6H medium borderline
ONIVA10G20890.1 Alkaloid H6H medium borderline
ONIVA11G05770.2 Alkaloid H6H medium pass
ONIVA11G09150.1 Alkaloid H6H low borderline
ONIVA11G11680.1 Alkaloid H6H medium borderline