PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
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Gene Pathway Family Confidence Status
ONIVA01G00310.1 Phenylpropanoid HCT medium pass
ONIVA01G05770.1 Phenylpropanoid HCT low borderline
ONIVA01G14330.1 Phenylpropanoid HCT low borderline
ONIVA01G18240.1 Phenylpropanoid HCT medium pass
ONIVA01G21300.1 Phenylpropanoid HCT low borderline
ONIVA01G25860.1 Phenylpropanoid HCT low borderline
ONIVA01G25870.1 Phenylpropanoid HCT low borderline
ONIVA01G48420.1 Phenylpropanoid HCT low borderline
ONIVA02G00080.1 Phenylpropanoid HCT low borderline
ONIVA02G26710.1 Phenylpropanoid HCT medium pass
ONIVA04G02430.1 Phenylpropanoid HCT low borderline
ONIVA04G16010.1 Phenylpropanoid HCT medium pass
ONIVA04G16020.1 Phenylpropanoid HCT medium pass
ONIVA04G23950.1 Phenylpropanoid HCT low borderline
ONIVA05G01250.1 Phenylpropanoid HCT low borderline
ONIVA05G02690.1 Phenylpropanoid HCT low borderline
ONIVA05G05690.1 Phenylpropanoid HCT low borderline
ONIVA06G15130.1 Phenylpropanoid HCT medium pass
ONIVA06G15150.1 Phenylpropanoid HCT medium pass
ONIVA06G15170.1 Phenylpropanoid HCT medium pass
ONIVA06G19560.1 Phenylpropanoid HCT low borderline
ONIVA06G23700.1 Phenylpropanoid HCT medium pass
ONIVA06G25650.1 Phenylpropanoid HCT low borderline
ONIVA06G29650.1 Phenylpropanoid HCT medium pass
ONIVA07G01040.1 Phenylpropanoid HCT low borderline
ONIVA07G16440.1 Phenylpropanoid HCT low borderline
ONIVA08G17270.1 Phenylpropanoid HCT low borderline
ONIVA08G17320.1 Phenylpropanoid HCT low borderline
ONIVA08G25350.1 Phenylpropanoid HCT medium pass
ONIVA09G10320.1 Phenylpropanoid HCT medium pass
ONIVA09G19960.1 Phenylpropanoid HCT low borderline
ONIVA10G00640.1 Phenylpropanoid HCT low borderline
ONIVA10G07880.1 Phenylpropanoid HCT low borderline
ONIVA10G07930.1 Phenylpropanoid HCT low borderline
ONIVA10G07930.2 Phenylpropanoid HCT low borderline
ONIVA10G07930.3 Phenylpropanoid HCT low borderline
ONIVA10G16890.1 Phenylpropanoid HCT medium pass
ONIVA11G05390.1 Phenylpropanoid HCT medium pass
ONIVA11G13980.1 Phenylpropanoid HCT medium pass
ONIVA12G11410.1 Phenylpropanoid HCT low borderline