PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
Reset
Gene Pathway Family Confidence Status
ONIVA01G06520.1 Alkaloid NCS medium borderline
ONIVA01G06520.2 Alkaloid NCS medium borderline
ONIVA01G17320.1 Alkaloid NCS medium borderline
ONIVA01G17330.1 Alkaloid NCS medium borderline
ONIVA02G19510.1 Alkaloid NCS medium borderline
ONIVA02G19510.2 Alkaloid NCS medium borderline
ONIVA02G19530.1 Alkaloid NCS medium borderline
ONIVA04G14110.1 Alkaloid NCS medium borderline
ONIVA04G17340.1 Alkaloid NCS medium borderline
ONIVA04G19810.1 Alkaloid NCS medium pass
ONIVA04G21960.1 Alkaloid NCS medium borderline
ONIVA04G21960.3 Alkaloid NCS medium borderline
ONIVA08G06680.1 Alkaloid NCS medium borderline
ONIVA09G05380.1 Alkaloid NCS low borderline
ONIVA09G06130.1 Alkaloid NCS medium borderline
ONIVA09G06160.1 Alkaloid NCS medium borderline
ONIVA09G06160.2 Alkaloid NCS medium borderline
ONIVA09G12860.1 Alkaloid NCS medium borderline
ONIVA10G18130.1 Alkaloid NCS medium borderline
ONIVA10G18130.2 Alkaloid NCS medium borderline
ONIVA10G20820.1 Alkaloid NCS medium borderline
ONIVA10G20830.1 Alkaloid NCS medium borderline
ONIVA10G20830.2 Alkaloid NCS medium borderline
ONIVA10G20860.1 Alkaloid NCS medium borderline
ONIVA11G05770.1 Alkaloid NCS medium borderline
ONIVA11G05770.3 Alkaloid NCS medium borderline