PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
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Gene Pathway Family Confidence Status
ONIVA01G14060.1 Flavonoid DFR medium borderline
ONIVA01G14060.2 Flavonoid DFR medium borderline
ONIVA01G40820.1 Flavonoid DFR medium borderline
ONIVA01G52200.1 Flavonoid DFR low borderline
ONIVA02G07150.1 Flavonoid DFR medium borderline
ONIVA02G07150.2 Flavonoid DFR medium borderline
ONIVA02G39470.1 Flavonoid DFR medium pass
ONIVA02G39490.1 Flavonoid DFR medium pass
ONIVA02G39690.1 Flavonoid DFR low borderline
ONIVA02G39690.2 Flavonoid DFR low borderline
ONIVA02G39690.3 Flavonoid DFR low borderline
ONIVA05G10130.1 Flavonoid DFR medium borderline
ONIVA06G25240.1 Flavonoid DFR medium borderline
ONIVA06G25270.1 Flavonoid DFR medium borderline
ONIVA07G08240.1 Flavonoid DFR low borderline
ONIVA08G04900.1 Flavonoid DFR medium borderline
ONIVA08G04900.2 Flavonoid DFR medium borderline
ONIVA08G04900.3 Flavonoid DFR medium borderline
ONIVA08G23310.1 Flavonoid DFR medium borderline
ONIVA08G23310.2 Flavonoid DFR medium borderline
ONIVA09G03040.1 Flavonoid DFR medium pass
ONIVA09G03060.1 Flavonoid DFR medium borderline
ONIVA09G03060.2 Flavonoid DFR medium borderline
ONIVA09G03060.3 Flavonoid DFR medium pass
ONIVA09G15530.1 Flavonoid DFR medium borderline
ONIVA09G15550.1 Flavonoid DFR medium borderline
ONIVA09G15600.1 Flavonoid DFR medium borderline
ONIVA09G15600.2 Flavonoid DFR medium pass
ONIVA09G15600.3 Flavonoid DFR medium pass
ONIVA09G15600.4 Flavonoid DFR medium pass
ONIVA11G18130.1 Flavonoid DFR low borderline