PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Gene Pathway Family Confidence Status Best Target
ONIVA01G00310.1 Terpenoid BAHD medium pass BAHD__00002__sp_A0A068BIF1_AT9_ACTER
ONIVA01G04240.1 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
ONIVA01G05770.1 Terpenoid BAHD medium pass BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC
ONIVA01G12030.1 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
ONIVA01G13730.2 Terpenoid BAHD medium pass BAHD__00085__sp_Q9M1K5_ZDH13_ARATH
ONIVA01G14330.1 Terpenoid BAHD low borderline BAHD__00001__sp_A0A068BGA5_AT1_ACTDE
ONIVA01G14420.1 Terpenoid BAHD low borderline BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
ONIVA01G14570.1 Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
ONIVA01G14630.1 Terpenoid BAHD medium pass BAHD__00027__sp_O80437_GPAT6_ARATH
ONIVA01G14960.1 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
ONIVA01G15410.1 Terpenoid BAHD medium pass BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
ONIVA01G15410.2 Terpenoid BAHD medium pass BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
ONIVA01G15880.1 Terpenoid BAHD medium pass BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
ONIVA01G18240.1 Terpenoid BAHD medium pass BAHD__00001__sp_A0A068BGA5_AT1_ACTDE
ONIVA01G21300.1 Terpenoid BAHD medium pass BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC
ONIVA01G21310.1 Terpenoid BAHD low borderline BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC
ONIVA01G23420.1 Terpenoid BAHD medium pass BAHD__00003__sp_A0A078H868_GPC1_BRANA
ONIVA01G23420.2 Terpenoid BAHD medium pass BAHD__00014__sp_B9RK42_GPC1_RICCO
ONIVA01G24790.1 Terpenoid BAHD medium pass BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
ONIVA01G25860.1 Terpenoid BAHD medium pass BAHD__00008__sp_A0A2Z5CVQ4_AT1_CROXC
ONIVA01G25870.1 Terpenoid BAHD medium pass BAHD__00008__sp_A0A2Z5CVQ4_AT1_CROXC
ONIVA01G26510.1 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA01G26550.1 Terpenoid BAHD medium pass BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
ONIVA01G30450.1 Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
ONIVA01G33300.1 Terpenoid BAHD medium pass BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
ONIVA01G33300.2 Terpenoid BAHD medium pass BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
ONIVA01G33300.3 Terpenoid BAHD medium pass BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
ONIVA01G33300.4 Terpenoid BAHD medium pass BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
ONIVA01G33460.1 Terpenoid BAHD medium pass BAHD__00092__sp_Q9SU91_LPXA_ARATH
ONIVA01G36710.1 Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
ONIVA01G36710.2 Terpenoid BAHD medium pass BAHD__00047__sp_Q5KS41_WSD11_ARATH
ONIVA01G37950.1 Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
ONIVA01G37950.2 Terpenoid BAHD medium pass BAHD__00058__sp_Q8LG50_LPAT2_ARATH
ONIVA01G41180.1 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
ONIVA01G43420.1 Terpenoid BAHD medium pass BAHD__00089__sp_Q9SB58_ZDH19_ARATH
ONIVA01G44020.1 Terpenoid BAHD low borderline BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
ONIVA01G48420.1 Terpenoid BAHD low borderline BAHD__00074__sp_Q9FFQ7_FACT_ARATH
ONIVA01G48470.1 Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
ONIVA01G49780.1 Terpenoid BAHD low borderline BAHD__00062__sp_Q93V61_LCAT3_ARATH
ONIVA01G50290.1 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
ONIVA02G00450.1 Terpenoid BAHD low borderline BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
ONIVA02G01000.1 Terpenoid BAHD low borderline BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA02G01010.1 Terpenoid BAHD medium pass BAHD__00027__sp_O80437_GPAT6_ARATH
ONIVA02G06620.1 Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
ONIVA02G07360.1 Terpenoid BAHD medium pass BAHD__00043__sp_Q52T38_ZDH22_ARATH
ONIVA02G13750.1 Terpenoid BAHD low borderline BAHD__00081__sp_Q9LJB4_5MAT_ARATH
ONIVA02G16320.1 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA02G16320.2 Terpenoid BAHD medium pass BAHD__00026__sp_O64811_SCP9_ARATH
ONIVA02G17140.1 Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH
ONIVA02G17520.1 Terpenoid BAHD medium pass BAHD__00093__sp_Q9SV07_ASAT1_ARATH