PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
ONIVA01G10290.1 Alkaloid IO medium borderline
ONIVA01G10320.3 Alkaloid IO medium borderline
ONIVA01G31770.1 Alkaloid IO medium borderline
ONIVA01G31770.2 Alkaloid IO medium borderline
ONIVA01G39070.1 Alkaloid IO low borderline
ONIVA01G39070.2 Alkaloid IO low borderline
ONIVA01G40290.1 Alkaloid IO medium borderline
ONIVA01G51320.1 Alkaloid IO low borderline
ONIVA02G30540.1 Alkaloid IO low borderline
ONIVA03G28680.1 Alkaloid IO medium borderline
ONIVA03G36450.1 Alkaloid IO medium borderline
ONIVA04G09580.1 Alkaloid IO medium borderline
ONIVA05G00130.1 Alkaloid IO low borderline
ONIVA06G07760.1 Alkaloid IO high pass
ONIVA06G11840.1 Alkaloid IO medium borderline
ONIVA07G15000.1 Alkaloid IO low borderline
ONIVA07G19370.2 Alkaloid IO medium borderline
ONIVA08G01870.1 Alkaloid IO medium borderline
ONIVA08G08950.1 Alkaloid IO low borderline
ONIVA08G25690.1 Alkaloid IO medium borderline
ONIVA09G19940.1 Alkaloid IO medium borderline
ONIVA10G06470.1 Alkaloid IO medium borderline
ONIVA12G15520.1 Alkaloid IO medium borderline