PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COMT
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Gene Pathway Family Confidence Status
ONIVA01G29700.1 Phenylpropanoid COMT low borderline
ONIVA01G35620.1 Phenylpropanoid COMT low borderline
ONIVA01G48910.1 Phenylpropanoid COMT medium pass
ONIVA01G48930.1 Phenylpropanoid COMT medium pass
ONIVA02G12820.1 Phenylpropanoid COMT low borderline
ONIVA02G40620.1 Phenylpropanoid COMT medium pass
ONIVA02G40620.2 Phenylpropanoid COMT medium pass
ONIVA04G00190.1 Phenylpropanoid COMT medium pass
ONIVA04G02190.1 Phenylpropanoid COMT medium pass
ONIVA04G02200.1 Phenylpropanoid COMT medium pass
ONIVA04G02210.1 Phenylpropanoid COMT medium pass
ONIVA04G02960.1 Phenylpropanoid COMT low borderline
ONIVA04G07110.1 Phenylpropanoid COMT low borderline
ONIVA05G10220.1 Phenylpropanoid COMT low borderline
ONIVA05G23640.1 Phenylpropanoid COMT medium pass
ONIVA05G23650.1 Phenylpropanoid COMT low borderline
ONIVA06G12600.1 Phenylpropanoid COMT low borderline
ONIVA06G22040.1 Phenylpropanoid COMT medium pass
ONIVA07G03790.1 Phenylpropanoid COMT low borderline
ONIVA07G11400.1 Phenylpropanoid COMT low borderline
ONIVA07G11480.1 Phenylpropanoid COMT low borderline
ONIVA07G11520.1 Phenylpropanoid COMT low borderline
ONIVA07G11530.1 Phenylpropanoid COMT medium pass
ONIVA07G15680.1 Phenylpropanoid COMT low borderline
ONIVA07G23860.1 Phenylpropanoid COMT low borderline
ONIVA08G03390.1 Phenylpropanoid COMT medium pass
ONIVA08G10370.1 Phenylpropanoid COMT medium pass
ONIVA08G13010.1 Phenylpropanoid COMT low borderline
ONIVA08G18680.1 Phenylpropanoid COMT medium pass
ONIVA08G20500.1 Phenylpropanoid COMT low borderline
ONIVA09G05660.1 Phenylpropanoid COMT low borderline
ONIVA10G01310.1 Phenylpropanoid COMT medium pass
ONIVA10G01330.1 Phenylpropanoid COMT medium pass
ONIVA10G15320.1 Phenylpropanoid COMT low borderline
ONIVA11G07790.1 Phenylpropanoid COMT medium pass
ONIVA11G08640.1 Phenylpropanoid COMT low borderline
ONIVA11G10660.1 Phenylpropanoid COMT low borderline
ONIVA11G10720.1 Phenylpropanoid COMT low borderline
ONIVA11G10730.1 Phenylpropanoid COMT low borderline
ONIVA11G15370.1 Phenylpropanoid COMT medium pass
ONIVA12G05450.1 Phenylpropanoid COMT medium pass
ONIVA12G07090.1 Phenylpropanoid COMT medium pass
ONIVA12G10730.1 Phenylpropanoid COMT low borderline
ONIVA12G17780.1 Phenylpropanoid COMT low borderline