PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
ONIVA01G14060.1 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA01G14060.2 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA01G25780.1 Phenylpropanoid CCR medium pass CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA01G26720.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
ONIVA01G27110.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
ONIVA01G27110.2 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
ONIVA01G40820.1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
ONIVA01G52200.1 Phenylpropanoid CCR medium pass CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
ONIVA02G07150.1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
ONIVA02G07150.2 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
ONIVA02G39470.1 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA02G39490.1 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA02G39690.1 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA02G39690.2 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA02G39690.3 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA03G18410.1 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA03G24570.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
ONIVA05G10130.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
ONIVA05G28990.1 Phenylpropanoid CCR medium pass CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
ONIVA06G25240.1 Phenylpropanoid CCR low borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
ONIVA06G25240.2 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
ONIVA06G25270.1 Phenylpropanoid CCR medium borderline CCR__00004__sp_G7JEE5_CCR2_MEDTR
ONIVA06G27190.1 Phenylpropanoid CCR low borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH
ONIVA07G08240.1 Phenylpropanoid CCR medium pass CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA07G19570.1 Phenylpropanoid CCR medium borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
ONIVA07G19910.1 Phenylpropanoid CCR medium pass CCR__00001__sp_A0A059TC02_CCR1_PETHY
ONIVA07G19910.2 Phenylpropanoid CCR medium pass CCR__00001__sp_A0A059TC02_CCR1_PETHY
ONIVA07G19940.1 Phenylpropanoid CCR low borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
ONIVA07G19940.2 Phenylpropanoid CCR low borderline CCR__00008__sp_Q9S9N9_CCR1_ARATH
ONIVA08G04900.1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
ONIVA08G04900.2 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
ONIVA08G04900.3 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
ONIVA08G09450.1 Phenylpropanoid CCR medium borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
ONIVA08G17750.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
ONIVA09G03040.1 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA09G03060.1 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA09G03060.2 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA09G03060.3 Phenylpropanoid CCR medium borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
ONIVA09G10110.1 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
ONIVA09G15530.1 Phenylpropanoid CCR low borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
ONIVA09G15550.1 Phenylpropanoid CCR low borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
ONIVA09G15600.3 Phenylpropanoid CCR low borderline CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
ONIVA10G14550.1 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH