Oryza nivara (oryza_nivara)
Imported from atlas release summary for Oryza nivara.
1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1919
Candidate Genes
BAHD
6.27%
C4H
6.1%
C3'H/CYP98A
5.9%
UGT
4.33%
UFGT
4.1%
7DLGT
4.08%
T3O
3.65%
CYP76
3.16%
Other Families
62.41%
More Families (98)
IFS
158
3.1%
4CL
150
2.94%
F3'H/CYP75B
136
2.67%
POD
131
2.57%
BR6OX2/CYP85A2
116
2.27%
DWF4/CYP90B1
111
2.18%
NMT
100
1.96%
STR
99
1.94%
F3H
99
1.94%
CYP71
96
1.88%
CAD
86
1.69%
SMT1/SMT2/SMT3
82
1.61%
CAS
82
1.61%
TPS
77
1.51%
GES
67
1.31%
SGD
57
1.12%
TRI/TRII
54
1.06%
PYKS
53
1.04%
IFR
50
0.98%
CODM/T6ODM
48
0.94%
H6H
48
0.94%
T16H
46
0.9%
G8O/G8H
46
0.9%
COMT
44
0.86%
CSE
43
0.84%
CCR
43
0.84%
LAC
42
0.82%
RAS
41
0.8%
SLS
40
0.78%
HCT
40
0.78%
PMT
39
0.76%
GS
37
0.73%
F5H/CYP84A
37
0.73%
16OMT
36
0.71%
F3'5'H/CYP75A
36
0.71%
ANR
36
0.71%
FNS
35
0.69%
CYP90D1
35
0.69%
CYP51G1
34
0.67%
PAL
33
0.65%
CHS
31
0.61%
DFR
31
0.61%
BR6OX1/CYP85A1
29
0.57%
NCS
26
0.51%
IO
23
0.45%
8HGO
23
0.45%
CPD/CYP90A1
23
0.45%
CNMT
21
0.41%
BBE
19
0.37%
7DLH
17
0.33%
LAMT
16
0.31%
COR
16
0.31%
MVK
15
0.29%
ANS/LDOX
14
0.27%
TAT
14
0.27%
ROT3/CYP90C1
13
0.25%
FPPS
12
0.24%
CCoAOMT
11
0.22%
CPR
11
0.22%
GGPPS
11
0.22%
CYP80B1
10
0.2%
XMT_MXMT_DXMT
10
0.2%
SQS/FDFT1
10
0.2%
CHI
9
0.18%
AACT
9
0.18%
MPO
8
0.16%
FK
8
0.16%
CYP80F1
7
0.14%
HPPR
7
0.14%
HMGR
7
0.14%
TYDC_DDC
6
0.12%
ADC
6
0.12%
SMO1/SMO2
6
0.12%
CYP719
5
0.1%
TDC
4
0.08%
DET2
4
0.08%
MCT/IspD
4
0.08%
DXS
4
0.08%
ODC
3
0.06%
ISY
3
0.06%
FLS
3
0.06%
HYD1
3
0.06%
DWF1
3
0.06%
PMK
3
0.06%
HMGS
3
0.06%
SQE
2
0.04%
DWF5
2
0.04%
MDS/IspF
2
0.04%
MVD
2
0.04%
HDR/IspH
2
0.04%
IDI
2
0.04%
6OMT_4OMT_SOMT
1
0.02%
DWF7
1
0.02%
CPI1
1
0.02%
DXR
1
0.02%
CMK/IspE
1
0.02%
HDS/IspG
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 573 | 19 | BAHD (237) | View species results |
| Alkaloid pathway | 445 | 24 | 7DLGT (78) | View species results |
| Phenylpropanoid pathway | 308 | 12 | POD (101) | View species results |
| Flavonoid pathway | 306 | 13 | UFGT (191) | View species results |
| Rosmarinic acid pathway | 150 | 7 | C4H (77) | View species results |
| Steroid pathway | 137 | 13 | SMT1/SMT2/SMT3 (53) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1977 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 401 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| ONIVA01G10410.1 | Alkaloid | SGD | medium | pass |
| ONIVA01G10410.2 | Alkaloid | SGD | medium | pass |
| ONIVA01G10410.3 | Alkaloid | SGD | medium | pass |
| ONIVA01G10410.4 | Alkaloid | SGD | medium | pass |
| ONIVA01G10410.5 | Alkaloid | SGD | medium | pass |
| ONIVA01G10420.1 | Alkaloid | SGD | medium | pass |
| ONIVA01G10420.2 | Alkaloid | SGD | medium | pass |
| ONIVA01G19160.1 | Alkaloid | SGD | medium | pass |
| ONIVA01G27250.1 | Alkaloid | SGD | medium | pass |
| ONIVA01G39810.1 | Alkaloid | SGD | medium | pass |
| ONIVA01G39820.1 | Alkaloid | SGD | medium | pass |
| ONIVA01G45520.1 | Alkaloid | SGD | medium | pass |
| ONIVA01G48830.1 | Alkaloid | SGD | medium | pass |
| ONIVA01G48830.2 | Alkaloid | SGD | medium | pass |
| ONIVA01G48830.3 | Alkaloid | SGD | low | borderline |
| ONIVA01G48830.4 | Alkaloid | SGD | low | borderline |
| ONIVA01G48830.5 | Alkaloid | SGD | medium | pass |
| ONIVA01G48830.6 | Alkaloid | SGD | low | borderline |
| ONIVA02G13050.1 | Alkaloid | SGD | medium | pass |
| ONIVA03G01300.1 | Alkaloid | SGD | low | borderline |
| ONIVA03G01300.2 | Alkaloid | SGD | low | borderline |
| ONIVA03G01300.3 | Alkaloid | SGD | low | borderline |
| ONIVA03G09000.1 | Alkaloid | SGD | medium | pass |
| ONIVA03G32390.1 | Alkaloid | SGD | low | borderline |
| ONIVA04G14010.1 | Alkaloid | SGD | medium | pass |
| ONIVA04G14020.1 | Alkaloid | SGD | medium | pass |
| ONIVA04G14030.1 | Alkaloid | SGD | medium | pass |
| ONIVA04G14030.2 | Alkaloid | SGD | medium | pass |
| ONIVA04G14030.3 | Alkaloid | SGD | medium | pass |
| ONIVA04G14030.4 | Alkaloid | SGD | medium | pass |
| ONIVA04G16920.1 | Alkaloid | SGD | low | borderline |
| ONIVA04G16920.2 | Alkaloid | SGD | low | borderline |
| ONIVA04G16920.3 | Alkaloid | SGD | low | borderline |
| ONIVA04G16920.4 | Alkaloid | SGD | low | borderline |
| ONIVA04G16920.5 | Alkaloid | SGD | medium | pass |
| ONIVA04G16940.1 | Alkaloid | SGD | medium | pass |
| ONIVA05G08280.1 | Alkaloid | SGD | low | borderline |
| ONIVA05G14230.1 | Alkaloid | SGD | medium | pass |
| ONIVA05G14230.2 | Alkaloid | SGD | medium | pass |
| ONIVA05G14250.1 | Alkaloid | SGD | low | borderline |
| ONIVA05G14250.2 | Alkaloid | SGD | low | borderline |
| ONIVA06G28130.1 | Alkaloid | SGD | medium | pass |
| ONIVA06G28130.2 | Alkaloid | SGD | medium | pass |
| ONIVA06G28130.3 | Alkaloid | SGD | medium | pass |
| ONIVA07G24530.1 | Alkaloid | SGD | low | borderline |
| ONIVA07G24530.2 | Alkaloid | SGD | low | borderline |
| ONIVA07G24530.3 | Alkaloid | SGD | low | borderline |
| ONIVA08G17410.1 | Alkaloid | SGD | medium | pass |
| ONIVA08G22580.1 | Alkaloid | SGD | medium | pass |
| ONIVA08G22590.1 | Alkaloid | SGD | medium | pass |