PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Gene Pathway Family Confidence Status
ONIVA01G00040.1 Terpenoid CYP76 low borderline
ONIVA01G06140.1 Terpenoid CYP76 low borderline
ONIVA01G10280.1 Terpenoid CYP76 low borderline
ONIVA01G10290.1 Terpenoid CYP76 medium borderline
ONIVA01G10310.1 Terpenoid CYP76 medium borderline
ONIVA01G10320.2 Terpenoid CYP76 medium borderline
ONIVA01G10320.3 Terpenoid CYP76 medium borderline
ONIVA01G21800.1 Terpenoid CYP76 medium borderline
ONIVA01G22330.1 Terpenoid CYP76 medium pass
ONIVA01G31760.1 Terpenoid CYP76 low borderline
ONIVA01G31770.1 Terpenoid CYP76 low borderline
ONIVA01G31770.2 Terpenoid CYP76 low borderline
ONIVA01G40290.1 Terpenoid CYP76 low borderline
ONIVA02G00730.1 Terpenoid CYP76 low borderline
ONIVA02G03530.1 Terpenoid CYP76 medium borderline
ONIVA02G09990.1 Terpenoid CYP76 low borderline
ONIVA02G14400.1 Terpenoid CYP76 medium borderline
ONIVA02G15760.1 Terpenoid CYP76 low borderline
ONIVA02G18910.1 Terpenoid CYP76 medium pass
ONIVA02G19050.1 Terpenoid CYP76 medium borderline
ONIVA02G19050.3 Terpenoid CYP76 medium borderline
ONIVA02G19050.4 Terpenoid CYP76 medium borderline
ONIVA02G19110.1 Terpenoid CYP76 low borderline
ONIVA02G19110.2 Terpenoid CYP76 low borderline
ONIVA02G19110.3 Terpenoid CYP76 medium pass
ONIVA02G23330.1 Terpenoid CYP76 medium borderline
ONIVA02G23370.1 Terpenoid CYP76 medium borderline
ONIVA02G23400.1 Terpenoid CYP76 medium borderline
ONIVA02G23540.1 Terpenoid CYP76 medium borderline
ONIVA03G01130.1 Terpenoid CYP76 medium borderline
ONIVA03G02330.1 Terpenoid CYP76 medium pass
ONIVA03G08250.1 Terpenoid CYP76 low borderline
ONIVA03G11140.1 Terpenoid CYP76 medium borderline
ONIVA03G11150.1 Terpenoid CYP76 medium borderline
ONIVA03G11230.1 Terpenoid CYP76 medium pass
ONIVA03G19440.1 Terpenoid CYP76 medium borderline
ONIVA03G23190.1 Terpenoid CYP76 medium pass
ONIVA03G23930.1 Terpenoid CYP76 medium borderline
ONIVA03G24960.1 Terpenoid CYP76 medium borderline
ONIVA03G25250.1 Terpenoid CYP76 medium pass
ONIVA03G26570.1 Terpenoid CYP76 low borderline
ONIVA03G28680.1 Terpenoid CYP76 medium borderline
ONIVA03G29230.1 Terpenoid CYP76 low borderline
ONIVA03G35580.1 Terpenoid CYP76 medium pass
ONIVA03G35600.1 Terpenoid CYP76 medium pass
ONIVA03G36450.1 Terpenoid CYP76 low borderline
ONIVA03G36450.2 Terpenoid CYP76 low borderline
ONIVA03G36450.3 Terpenoid CYP76 medium pass
ONIVA04G00050.1 Terpenoid CYP76 medium borderline
ONIVA04G01000.1 Terpenoid CYP76 low borderline