PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status
ONIVA01G08610.1 Phenylpropanoid LAC low borderline
ONIVA01G17960.1 Phenylpropanoid LAC medium pass
ONIVA01G26780.1 Phenylpropanoid LAC medium pass
ONIVA01G40770.1 Phenylpropanoid LAC medium pass
ONIVA01G42310.1 Phenylpropanoid LAC low borderline
ONIVA01G42310.2 Phenylpropanoid LAC medium pass
ONIVA01G42310.3 Phenylpropanoid LAC medium pass
ONIVA01G42310.4 Phenylpropanoid LAC medium pass
ONIVA01G42310.5 Phenylpropanoid LAC medium pass
ONIVA03G15230.1 Phenylpropanoid LAC medium pass
ONIVA04G20150.1 Phenylpropanoid LAC low borderline
ONIVA05G08970.1 Phenylpropanoid LAC low borderline
ONIVA05G20020.1 Phenylpropanoid LAC medium pass
ONIVA05G20040.1 Phenylpropanoid LAC medium pass
ONIVA05G20050.1 Phenylpropanoid LAC medium pass
ONIVA06G00270.1 Phenylpropanoid LAC low borderline
ONIVA06G04400.1 Phenylpropanoid LAC medium pass
ONIVA06G22620.1 Phenylpropanoid LAC medium pass
ONIVA06G22640.1 Phenylpropanoid LAC low borderline
ONIVA07G00170.1 Phenylpropanoid LAC low borderline
ONIVA08G03150.1 Phenylpropanoid LAC low borderline
ONIVA08G17370.1 Phenylpropanoid LAC medium pass
ONIVA08G17390.1 Phenylpropanoid LAC medium pass
ONIVA09G00350.1 Phenylpropanoid LAC medium pass
ONIVA09G06820.1 Phenylpropanoid LAC medium pass
ONIVA09G16880.1 Phenylpropanoid LAC medium pass
ONIVA10G04700.1 Phenylpropanoid LAC medium pass
ONIVA10G06210.1 Phenylpropanoid LAC medium pass
ONIVA10G10110.1 Phenylpropanoid LAC medium pass
ONIVA10G10300.1 Phenylpropanoid LAC medium pass
ONIVA11G00180.1 Phenylpropanoid LAC medium pass
ONIVA11G08680.1 Phenylpropanoid LAC low borderline
ONIVA11G08960.1 Phenylpropanoid LAC medium pass
ONIVA11G10870.1 Phenylpropanoid LAC medium pass
ONIVA11G11610.1 Phenylpropanoid LAC low borderline
ONIVA11G13420.1 Phenylpropanoid LAC medium pass
ONIVA11G23350.1 Phenylpropanoid LAC medium pass
ONIVA12G00640.1 Phenylpropanoid LAC medium pass
ONIVA12G07520.1 Phenylpropanoid LAC medium pass
ONIVA12G07630.1 Phenylpropanoid LAC medium pass
ONIVA12G09010.1 Phenylpropanoid LAC medium pass
ONIVA12G10450.1 Phenylpropanoid LAC medium pass