PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status
ONIVA01G09470.1 Phenylpropanoid CSE medium pass
ONIVA01G09480.1 Phenylpropanoid CSE medium pass
ONIVA01G15950.1 Phenylpropanoid CSE medium pass
ONIVA01G15950.2 Phenylpropanoid CSE medium pass
ONIVA01G16020.1 Phenylpropanoid CSE medium pass
ONIVA01G16030.1 Phenylpropanoid CSE medium pass
ONIVA01G17100.1 Phenylpropanoid CSE medium pass
ONIVA01G17160.1 Phenylpropanoid CSE medium pass
ONIVA01G17170.1 Phenylpropanoid CSE medium pass
ONIVA01G25750.1 Phenylpropanoid CSE medium pass
ONIVA01G25760.1 Phenylpropanoid CSE medium pass
ONIVA01G30980.1 Phenylpropanoid CSE medium pass
ONIVA01G46150.1 Phenylpropanoid CSE medium pass
ONIVA01G51690.1 Phenylpropanoid CSE medium pass
ONIVA02G07980.1 Phenylpropanoid CSE medium pass
ONIVA02G17620.1 Phenylpropanoid CSE medium pass
ONIVA02G23820.1 Phenylpropanoid CSE low borderline
ONIVA02G32910.1 Phenylpropanoid CSE medium pass
ONIVA03G23680.1 Phenylpropanoid CSE medium pass
ONIVA03G25890.1 Phenylpropanoid CSE medium pass
ONIVA03G25900.1 Phenylpropanoid CSE medium pass
ONIVA03G25910.1 Phenylpropanoid CSE medium pass
ONIVA03G25930.1 Phenylpropanoid CSE medium pass
ONIVA04G05760.1 Phenylpropanoid CSE medium pass
ONIVA04G06200.1 Phenylpropanoid CSE medium pass
ONIVA04G06200.2 Phenylpropanoid CSE medium pass
ONIVA04G17580.1 Phenylpropanoid CSE medium pass
ONIVA04G25990.1 Phenylpropanoid CSE medium pass
ONIVA04G27540.1 Phenylpropanoid CSE medium pass
ONIVA04G27560.1 Phenylpropanoid CSE medium pass
ONIVA05G00590.1 Phenylpropanoid CSE medium pass
ONIVA06G10330.1 Phenylpropanoid CSE medium pass
ONIVA07G12810.1 Phenylpropanoid CSE medium pass
ONIVA08G26390.1 Phenylpropanoid CSE medium pass
ONIVA09G12200.1 Phenylpropanoid CSE medium pass
ONIVA09G12200.2 Phenylpropanoid CSE medium pass
ONIVA09G12200.3 Phenylpropanoid CSE medium pass
ONIVA09G15770.1 Phenylpropanoid CSE medium pass
ONIVA09G20820.1 Phenylpropanoid CSE medium pass
ONIVA10G06310.1 Phenylpropanoid CSE medium pass
ONIVA10G06380.1 Phenylpropanoid CSE medium pass
ONIVA11G08730.1 Phenylpropanoid CSE medium pass
ONIVA12G07850.1 Phenylpropanoid CSE medium pass