PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
ONIVA01G05550.1 Alkaloid 7DLGT medium pass
ONIVA01G05570.1 Alkaloid 7DLGT low borderline
ONIVA01G05570.2 Alkaloid 7DLGT low borderline
ONIVA01G05570.3 Alkaloid 7DLGT high pass
ONIVA01G05820.1 Alkaloid 7DLGT low borderline
ONIVA01G07120.1 Alkaloid 7DLGT medium pass
ONIVA01G24800.1 Alkaloid 7DLGT low borderline
ONIVA01G27040.1 Alkaloid 7DLGT low borderline
ONIVA01G27080.1 Alkaloid 7DLGT low borderline
ONIVA01G30080.1 Alkaloid 7DLGT low borderline
ONIVA01G30100.1 Alkaloid 7DLGT low borderline
ONIVA01G30130.1 Alkaloid 7DLGT low borderline
ONIVA01G30140.1 Alkaloid 7DLGT low borderline
ONIVA01G30170.1 Alkaloid 7DLGT low borderline
ONIVA01G30840.1 Alkaloid 7DLGT medium pass
ONIVA01G31580.1 Alkaloid 7DLGT low borderline
ONIVA01G34290.1 Alkaloid 7DLGT medium pass
ONIVA01G34290.2 Alkaloid 7DLGT medium pass
ONIVA01G34330.1 Alkaloid 7DLGT low borderline
ONIVA01G34340.1 Alkaloid 7DLGT medium pass
ONIVA01G34350.1 Alkaloid 7DLGT low borderline
ONIVA01G34400.1 Alkaloid 7DLGT medium pass
ONIVA01G43040.1 Alkaloid 7DLGT low borderline
ONIVA01G43520.1 Alkaloid 7DLGT low borderline
ONIVA02G03980.1 Alkaloid 7DLGT low borderline
ONIVA02G08240.1 Alkaloid 7DLGT low borderline
ONIVA02G09420.1 Alkaloid 7DLGT low borderline
ONIVA02G09620.1 Alkaloid 7DLGT low borderline
ONIVA02G09630.1 Alkaloid 7DLGT medium pass
ONIVA02G09650.1 Alkaloid 7DLGT low borderline
ONIVA02G09660.1 Alkaloid 7DLGT low borderline
ONIVA02G09670.1 Alkaloid 7DLGT low borderline
ONIVA02G09700.1 Alkaloid 7DLGT low borderline
ONIVA02G11320.1 Alkaloid 7DLGT medium pass
ONIVA02G11340.1 Alkaloid 7DLGT medium pass
ONIVA02G11350.1 Alkaloid 7DLGT low borderline
ONIVA02G11360.1 Alkaloid 7DLGT low borderline
ONIVA02G11380.1 Alkaloid 7DLGT medium pass
ONIVA02G11400.1 Alkaloid 7DLGT medium pass
ONIVA02G11400.2 Alkaloid 7DLGT medium pass
ONIVA02G12300.1 Alkaloid 7DLGT high pass
ONIVA02G16140.1 Alkaloid 7DLGT low borderline
ONIVA02G20120.1 Alkaloid 7DLGT medium pass
ONIVA02G23960.1 Alkaloid 7DLGT medium pass
ONIVA02G23990.1 Alkaloid 7DLGT medium pass
ONIVA02G24000.1 Alkaloid 7DLGT medium pass
ONIVA02G27530.1 Alkaloid 7DLGT low borderline
ONIVA02G30110.1 Alkaloid 7DLGT low borderline
ONIVA02G30130.1 Alkaloid 7DLGT low borderline
ONIVA02G30190.1 Alkaloid 7DLGT low borderline