PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UFGT
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Gene Pathway Family Confidence Status
ONIVA01G05550.1 Flavonoid UFGT medium pass
ONIVA01G05570.1 Flavonoid UFGT medium pass
ONIVA01G05570.2 Flavonoid UFGT medium pass
ONIVA01G05570.3 Flavonoid UFGT medium pass
ONIVA01G05820.1 Flavonoid UFGT medium pass
ONIVA01G07120.1 Flavonoid UFGT medium pass
ONIVA01G24800.1 Flavonoid UFGT high pass
ONIVA01G27040.1 Flavonoid UFGT high pass
ONIVA01G27080.1 Flavonoid UFGT high pass
ONIVA01G30080.1 Flavonoid UFGT high pass
ONIVA01G30100.1 Flavonoid UFGT high pass
ONIVA01G30130.1 Flavonoid UFGT high pass
ONIVA01G30140.1 Flavonoid UFGT medium pass
ONIVA01G30170.1 Flavonoid UFGT medium pass
ONIVA01G30840.1 Flavonoid UFGT medium pass
ONIVA01G31580.1 Flavonoid UFGT high pass
ONIVA01G34290.1 Flavonoid UFGT high pass
ONIVA01G34290.2 Flavonoid UFGT high pass
ONIVA01G34330.1 Flavonoid UFGT medium pass
ONIVA01G34340.1 Flavonoid UFGT high pass
ONIVA01G34350.1 Flavonoid UFGT medium pass
ONIVA01G34400.1 Flavonoid UFGT medium pass
ONIVA01G43040.1 Flavonoid UFGT high pass
ONIVA01G43220.1 Flavonoid UFGT low borderline
ONIVA01G43520.1 Flavonoid UFGT medium pass
ONIVA02G03980.1 Flavonoid UFGT medium pass
ONIVA02G07780.1 Flavonoid UFGT low borderline
ONIVA02G07780.3 Flavonoid UFGT low borderline
ONIVA02G08240.1 Flavonoid UFGT high pass
ONIVA02G09420.1 Flavonoid UFGT medium pass
ONIVA02G09620.1 Flavonoid UFGT medium pass
ONIVA02G09630.1 Flavonoid UFGT high pass
ONIVA02G09650.1 Flavonoid UFGT medium pass
ONIVA02G09660.1 Flavonoid UFGT medium pass
ONIVA02G09670.1 Flavonoid UFGT medium pass
ONIVA02G11320.1 Flavonoid UFGT high pass
ONIVA02G11340.1 Flavonoid UFGT medium pass
ONIVA02G11350.1 Flavonoid UFGT medium pass
ONIVA02G11360.1 Flavonoid UFGT medium pass
ONIVA02G11380.1 Flavonoid UFGT medium pass
ONIVA02G11400.1 Flavonoid UFGT medium pass
ONIVA02G11400.2 Flavonoid UFGT medium pass
ONIVA02G12300.1 Flavonoid UFGT high pass
ONIVA02G16140.1 Flavonoid UFGT low borderline
ONIVA02G20120.1 Flavonoid UFGT medium pass
ONIVA02G23960.1 Flavonoid UFGT high pass
ONIVA02G23990.1 Flavonoid UFGT medium pass
ONIVA02G24000.1 Flavonoid UFGT medium pass
ONIVA02G27530.1 Flavonoid UFGT medium pass
ONIVA02G30110.1 Flavonoid UFGT medium pass