PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

1919
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMT1/SMT2/SMT3
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Gene Pathway Family Confidence Status
ONIVA01G04240.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA01G26510.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA01G36920.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA01G41180.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA02G01000.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA02G16320.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA02G16320.2 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA02G27560.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA02G37800.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA03G02460.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA03G06390.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA03G06390.2 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA03G18620.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA03G18640.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA03G21450.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA03G21450.2 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA03G21450.3 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA03G21450.4 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA03G21450.5 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA03G21860.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA03G21940.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA03G21940.3 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA03G34440.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA03G34440.2 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA03G34440.3 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA04G02220.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA04G02220.2 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA04G06290.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA04G08870.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA05G04450.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA05G16070.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA05G16070.2 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA05G16070.3 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA05G16070.4 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA05G25910.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA06G00890.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA06G06520.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA06G10210.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA06G15240.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA06G15820.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA06G31220.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA07G06190.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA07G12700.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA07G22370.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA07G24590.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA08G05190.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA08G14040.1 Steroid SMT1/SMT2/SMT3 medium pass
ONIVA08G26680.2 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA09G13490.1 Steroid SMT1/SMT2/SMT3 low borderline
ONIVA10G00100.1 Steroid SMT1/SMT2/SMT3 medium pass