PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ONIVA03G29240.1 Alkaloid T3O medium pass
ONIVA03G35580.1 Alkaloid T3O medium borderline
ONIVA03G35600.1 Alkaloid T3O medium borderline
ONIVA03G36450.2 Alkaloid T3O medium pass
ONIVA03G36900.1 Alkaloid T3O low borderline
ONIVA03G41980.1 Alkaloid T3O medium pass
ONIVA03G43130.1 Alkaloid T3O medium borderline
ONIVA03G43130.2 Alkaloid T3O medium borderline
ONIVA04G00050.1 Alkaloid T3O medium borderline
ONIVA04G02330.1 Alkaloid T3O medium borderline
ONIVA04G06510.1 Alkaloid T3O medium borderline
ONIVA04G14400.1 Alkaloid T3O medium borderline
ONIVA04G14400.2 Alkaloid T3O medium borderline
ONIVA04G14400.4 Alkaloid T3O medium borderline
ONIVA04G20010.1 Alkaloid T3O low borderline
ONIVA04G20700.1 Alkaloid T3O medium pass
ONIVA04G21770.1 Alkaloid T3O medium borderline
ONIVA04G25670.1 Alkaloid T3O medium pass
ONIVA04G27320.1 Alkaloid T3O medium pass
ONIVA05G05890.1 Alkaloid T3O medium pass
ONIVA05G07190.1 Alkaloid T3O medium pass
ONIVA05G13310.1 Alkaloid T3O medium pass
ONIVA05G15200.1 Alkaloid T3O medium pass
ONIVA05G17840.1 Alkaloid T3O medium borderline
ONIVA05G19250.1 Alkaloid T3O low borderline
ONIVA05G20500.1 Alkaloid T3O medium borderline
ONIVA05G22030.1 Alkaloid T3O medium borderline
ONIVA05G24320.1 Alkaloid T3O medium pass
ONIVA05G29230.1 Alkaloid T3O medium borderline
ONIVA06G00090.1 Alkaloid T3O medium borderline
ONIVA06G00640.1 Alkaloid T3O medium pass
ONIVA06G01070.1 Alkaloid T3O low borderline
ONIVA06G07930.1 Alkaloid T3O medium borderline
ONIVA06G07960.1 Alkaloid T3O medium borderline
ONIVA06G14720.1 Alkaloid T3O medium pass
ONIVA06G14860.1 Alkaloid T3O medium borderline
ONIVA06G17020.1 Alkaloid T3O medium borderline
ONIVA06G18770.1 Alkaloid T3O medium borderline
ONIVA06G18770.2 Alkaloid T3O medium borderline
ONIVA06G18990.1 Alkaloid T3O medium borderline
ONIVA06G19030.1 Alkaloid T3O medium borderline
ONIVA06G22530.1 Alkaloid T3O medium pass
ONIVA06G22810.1 Alkaloid T3O medium pass
ONIVA06G24750.1 Alkaloid T3O medium borderline
ONIVA06G24910.1 Alkaloid T3O medium borderline
ONIVA06G26300.1 Alkaloid T3O medium borderline
ONIVA06G26310.1 Alkaloid T3O medium borderline
ONIVA06G26320.1 Alkaloid T3O medium borderline
ONIVA06G30530.1 Alkaloid T3O medium borderline
ONIVA07G05910.1 Alkaloid T3O medium borderline