PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ONIVA10G17210.1 Steroid DWF4/CYP90B1 low borderline
ONIVA10G17790.1 Steroid DWF4/CYP90B1 low borderline
ONIVA10G17790.2 Steroid DWF4/CYP90B1 low borderline
ONIVA10G18230.1 Steroid DWF4/CYP90B1 low borderline
ONIVA11G01290.2 Steroid DWF4/CYP90B1 medium borderline
ONIVA11G02550.1 Steroid DWF4/CYP90B1 low borderline
ONIVA11G02550.2 Steroid DWF4/CYP90B1 low borderline
ONIVA11G02550.3 Steroid DWF4/CYP90B1 low borderline
ONIVA11G02720.1 Steroid DWF4/CYP90B1 low borderline
ONIVA11G11160.1 Steroid DWF4/CYP90B1 low borderline
ONIVA11G11190.1 Steroid DWF4/CYP90B1 low borderline
ONIVA11G20640.1 Steroid DWF4/CYP90B1 low borderline
ONIVA11G20640.2 Steroid DWF4/CYP90B1 low borderline
ONIVA11G20640.3 Steroid DWF4/CYP90B1 low borderline
ONIVA12G02660.1 Steroid DWF4/CYP90B1 low borderline
ONIVA12G05140.1 Steroid DWF4/CYP90B1 low borderline
ONIVA12G15520.1 Steroid DWF4/CYP90B1 low borderline
ONIVA12G15530.1 Steroid DWF4/CYP90B1 low borderline
ONIVA08G14170.1 Steroid DWF5 medium borderline
ONIVA08G14170.2 Steroid DWF5 medium pass
ONIVA01G02420.1 Steroid DWF7 medium pass
ONIVA01G17410.1 Steroid FK high pass
ONIVA01G17410.2 Steroid FK high pass
ONIVA01G17410.3 Steroid FK high pass
ONIVA03G00790.1 Steroid FK medium pass
ONIVA03G00790.2 Steroid FK medium pass
ONIVA03G00790.3 Steroid FK medium pass
ONIVA03G00790.4 Steroid FK medium pass
ONIVA03G00790.5 Steroid FK medium pass
ONIVA01G00190.1 Steroid HYD1 high pass
ONIVA01G00190.2 Steroid HYD1 high pass
ONIVA08G16940.1 Steroid HYD1 medium pass
ONIVA01G07210.1 Steroid ROT3/CYP90C1 medium borderline
ONIVA01G07210.2 Steroid ROT3/CYP90C1 medium borderline
ONIVA01G07210.4 Steroid ROT3/CYP90C1 low borderline
ONIVA01G09140.1 Steroid ROT3/CYP90C1 low borderline
ONIVA02G30540.1 Steroid ROT3/CYP90C1 medium borderline
ONIVA02G39360.1 Steroid ROT3/CYP90C1 medium borderline
ONIVA03G41980.1 Steroid ROT3/CYP90C1 medium borderline
ONIVA05G07190.1 Steroid ROT3/CYP90C1 medium borderline
ONIVA06G25720.1 Steroid ROT3/CYP90C1 low borderline
ONIVA07G12890.1 Steroid ROT3/CYP90C1 medium borderline
ONIVA07G15000.1 Steroid ROT3/CYP90C1 medium borderline
ONIVA10G05710.1 Steroid ROT3/CYP90C1 low borderline
ONIVA12G18590.1 Steroid ROT3/CYP90C1 low borderline
ONIVA10G19740.1 Steroid SMO1/SMO2 medium pass
ONIVA11G21100.1 Steroid SMO1/SMO2 medium pass
ONIVA11G23310.1 Steroid SMO1/SMO2 medium pass
ONIVA12G09060.1 Steroid SMO1/SMO2 medium pass
ONIVA12G09060.2 Steroid SMO1/SMO2 medium pass