PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ONIVA02G15760.1 Alkaloid CYP80B1 medium borderline
ONIVA03G25250.1 Alkaloid CYP80B1 medium borderline
ONIVA04G01000.1 Alkaloid CYP80B1 medium borderline
ONIVA04G02070.1 Alkaloid CYP80B1 medium borderline
ONIVA04G02070.2 Alkaloid CYP80B1 medium borderline
ONIVA04G02400.1 Alkaloid CYP80B1 medium borderline
ONIVA06G01840.1 Alkaloid CYP80B1 low borderline
ONIVA06G22720.1 Alkaloid CYP80B1 medium borderline
ONIVA06G22720.2 Alkaloid CYP80B1 medium borderline
ONIVA10G04030.1 Alkaloid CYP80B1 low borderline
ONIVA01G10480.1 Alkaloid CYP80F1 medium borderline
ONIVA02G00890.1 Alkaloid CYP80F1 medium borderline
ONIVA05G07890.1 Alkaloid CYP80F1 medium borderline
ONIVA05G17270.1 Alkaloid CYP80F1 medium borderline
ONIVA06G06190.1 Alkaloid CYP80F1 low borderline
ONIVA07G17380.1 Alkaloid CYP80F1 medium borderline
ONIVA10G07870.1 Alkaloid CYP80F1 medium borderline
ONIVA01G00040.1 Alkaloid G8O/G8H medium borderline
ONIVA01G10270.1 Alkaloid G8O/G8H medium borderline
ONIVA01G10270.2 Alkaloid G8O/G8H medium borderline
ONIVA01G10280.1 Alkaloid G8O/G8H medium borderline
ONIVA01G10300.1 Alkaloid G8O/G8H medium pass
ONIVA01G22330.1 Alkaloid G8O/G8H medium borderline
ONIVA02G18910.1 Alkaloid G8O/G8H medium borderline
ONIVA02G19110.2 Alkaloid G8O/G8H medium borderline
ONIVA03G02330.1 Alkaloid G8O/G8H medium borderline
ONIVA03G11230.1 Alkaloid G8O/G8H medium borderline
ONIVA03G24960.1 Alkaloid G8O/G8H medium borderline
ONIVA03G26570.1 Alkaloid G8O/G8H medium borderline
ONIVA04G01030.1 Alkaloid G8O/G8H medium borderline
ONIVA04G18400.1 Alkaloid G8O/G8H medium borderline
ONIVA05G12040.1 Alkaloid G8O/G8H low borderline
ONIVA05G20520.1 Alkaloid G8O/G8H medium borderline
ONIVA05G23620.1 Alkaloid G8O/G8H medium borderline
ONIVA05G27470.1 Alkaloid G8O/G8H medium borderline
ONIVA06G13170.1 Alkaloid G8O/G8H medium borderline
ONIVA06G15520.1 Alkaloid G8O/G8H medium borderline
ONIVA06G22770.1 Alkaloid G8O/G8H medium borderline
ONIVA06G22790.1 Alkaloid G8O/G8H medium borderline
ONIVA06G25720.1 Alkaloid G8O/G8H medium borderline
ONIVA07G10710.1 Alkaloid G8O/G8H medium borderline
ONIVA08G00390.1 Alkaloid G8O/G8H medium borderline
ONIVA08G02090.1 Alkaloid G8O/G8H medium borderline
ONIVA08G06300.1 Alkaloid G8O/G8H medium borderline
ONIVA08G19280.1 Alkaloid G8O/G8H medium borderline
ONIVA08G22490.1 Alkaloid G8O/G8H medium borderline
ONIVA09G07550.1 Alkaloid G8O/G8H medium borderline
ONIVA09G13160.1 Alkaloid G8O/G8H medium borderline
ONIVA09G18630.1 Alkaloid G8O/G8H low borderline
ONIVA10G01810.1 Alkaloid G8O/G8H medium borderline