PlantSME Plant secondary metabolism enzyme database

Oryza nivara (oryza_nivara)

Imported from atlas release summary for Oryza nivara.

2400
Candidate Protein Records
1919
Pathway-Level Records
5100
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 573 19 BAHD (237) View species results
Alkaloid pathway 445 24 7DLGT (78) View species results
Phenylpropanoid pathway 308 12 POD (101) View species results
Flavonoid pathway 306 13 UFGT (191) View species results
Rosmarinic acid pathway 150 7 C4H (77) View species results
Steroid pathway 137 13 SMT1/SMT2/SMT3 (53) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1977 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 401 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ONIVA07G18410.1 Terpenoid GGPPS medium borderline
ONIVA07G18410.2 Terpenoid GGPPS medium borderline
ONIVA08G05410.1 Terpenoid GGPPS medium borderline
ONIVA08G05410.2 Terpenoid GGPPS medium borderline
ONIVA08G05410.3 Terpenoid GGPPS medium borderline
ONIVA08G05410.4 Terpenoid GGPPS medium borderline
ONIVA08G05410.5 Terpenoid GGPPS medium borderline
ONIVA11G16960.1 Terpenoid GGPPS medium borderline
ONIVA12G07800.1 Terpenoid GGPPS medium borderline
ONIVA12G14090.1 Terpenoid GGPPS medium borderline
ONIVA07G12530.1 Terpenoid GPPS low borderline
ONIVA03G34530.1 Terpenoid HDR/IspH high pass
ONIVA03G34540.1 Terpenoid HDR/IspH high pass
ONIVA02G26130.1 Terpenoid HDS/IspG high pass
ONIVA02G32800.1 Terpenoid HMGR medium pass
ONIVA07G24390.1 Terpenoid HMGR low borderline
ONIVA08G13750.1 Terpenoid HMGR low borderline
ONIVA08G22870.1 Terpenoid HMGR medium pass
ONIVA09G15560.1 Terpenoid HMGR medium pass
ONIVA09G15560.2 Terpenoid HMGR medium pass
ONIVA12G11450.1 Terpenoid HMGR low borderline
ONIVA08G25470.1 Terpenoid HMGS high pass
ONIVA09G11570.1 Terpenoid HMGS high pass
ONIVA09G17840.1 Terpenoid HMGS high pass
ONIVA05G17130.1 Terpenoid IDI medium pass
ONIVA07G16110.1 Terpenoid IDI medium pass
ONIVA01G44680.1 Terpenoid MCT/IspD high pass
ONIVA04G24210.1 Terpenoid MCT/IspD low borderline
ONIVA04G24210.2 Terpenoid MCT/IspD low borderline
ONIVA11G18000.1 Terpenoid MCT/IspD low borderline
ONIVA01G51700.1 Terpenoid MDS/IspF low borderline
ONIVA02G31040.1 Terpenoid MDS/IspF high pass
ONIVA02G00630.1 Terpenoid MVD medium pass
ONIVA07G21790.1 Terpenoid MVD low borderline
ONIVA02G41270.1 Terpenoid MVK low borderline
ONIVA03G41770.1 Terpenoid MVK low borderline
ONIVA05G18100.1 Terpenoid MVK low borderline
ONIVA08G04150.1 Terpenoid MVK medium pass
ONIVA09G07120.1 Terpenoid MVK low borderline
ONIVA09G07120.2 Terpenoid MVK low borderline
ONIVA09G11290.1 Terpenoid MVK low borderline
ONIVA10G02760.1 Terpenoid MVK low borderline
ONIVA10G05590.1 Terpenoid MVK medium pass
ONIVA10G05590.2 Terpenoid MVK medium pass
ONIVA10G05590.3 Terpenoid MVK medium pass
ONIVA10G05590.4 Terpenoid MVK medium pass
ONIVA10G05590.5 Terpenoid MVK medium pass
ONIVA10G05590.6 Terpenoid MVK medium pass
ONIVA10G05590.7 Terpenoid MVK medium pass
ONIVA03G11450.1 Terpenoid PMK medium pass