PlantSME Plant secondary metabolism enzyme database

Piper nigrum (piper_nigrum)

Imported from atlas release summary for Piper nigrum.

2984
Candidate Protein Records
2845
Pathway-Level Records
5474
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Current group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 32.48% Alkaloid pathway 24.6% Phenylpropanoid pathway 19.96% Flavonoid pathway 8.96% Rosmarinic acid pathway 8.75% Steroid pathway 5.24%
Family Distribution
BAHD 5.81% TPS 5.39% CYP76 5.1% UGT 4.68% 4CL 4.49% POD 4.13% GES 4.11% C4H 3.71%
Other Families 62.59%
More Families (97)
UFGT 174 3.18% 7DLGT 167 3.05% NMT 159 2.9% F3'H/CYP75B 152 2.78% CAS 150 2.74% CAD 128 2.34% C3'H/CYP98A 125 2.28% F5H/CYP84A 109 1.99% G8O/G8H 108 1.97% STR 99 1.81% F3H 90 1.64% COMT 89 1.63% SMT1/SMT2/SMT3 74 1.35% F3'5'H/CYP75A 73 1.33% PAL 69 1.26% CODM/T6ODM 66 1.21% IO 63 1.15% CSE 62 1.13% T16H 58 1.06% CYP71 54 0.99% 6OMT_4OMT_SOMT 50 0.91% ANS/LDOX 50 0.91% HCT 50 0.91% SLS 48 0.88% LAC 48 0.88% TRI/TRII 46 0.84% IFR 46 0.84% FNS 45 0.82% NCS 43 0.79% RAS 43 0.79% CNMT 41 0.75% BR6OX1/CYP85A1 40 0.73% HMGR 40 0.73% CYP80B1 39 0.71% SGD 35 0.64% BBE 34 0.62% CPD/CYP90A1 34 0.62% DWF4/CYP90B1 34 0.62% PMT 31 0.57% DFR 29 0.53% 7DLH 27 0.49% CCR 27 0.49% CCoAOMT 26 0.47% MPO 22 0.4% CHS 22 0.4% ODC 21 0.38% 8HGO 20 0.37% PYKS 19 0.35% TAT 19 0.35% 16OMT 18 0.33% T3O 17 0.31% COR 17 0.31% CYP719 17 0.31% IFS 17 0.31% CPR 17 0.31% H6H 16 0.29% CYP51G1 15 0.27% TYDC_DDC 14 0.26% FPPS 14 0.26% GS 13 0.24% DXS 13 0.24% CYP90D1 11 0.2% SMO1/SMO2 10 0.18% ROT3/CYP90C1 10 0.18% ISY 7 0.13% XMT_MXMT_DXMT 7 0.13% LAMT 7 0.13% HPPR 7 0.13% DET2 7 0.13% TDC 5 0.09% AACT 5 0.09% ADC 4 0.07% ANR 4 0.07% CHI 4 0.07% DWF1 4 0.07% DWF7 4 0.07% FLS 3 0.05% BR6OX2/CYP85A2 3 0.05% HDR/IspH 3 0.05% CMK/IspE 3 0.05% DXR 3 0.05% HMGS 3 0.05% IDI 3 0.05% HDS/IspG 3 0.05% CYP80F1 2 0.04% SQE 2 0.04% SQS/FDFT1 2 0.04% CPI1 2 0.04% PMK 2 0.04% GGPPS 2 0.04% MVD 2 0.04% DWF5 1 0.02% FK 1 0.02% GPPS 1 0.02% MVK 1 0.02% MDS/IspF 1 0.02% MCT/IspD 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 924 18 TPS (287) View species results
Alkaloid pathway 700 30 GES (204) View species results
Phenylpropanoid pathway 568 13 POD (198) View species results
Flavonoid pathway 255 13 UFGT (67) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 149 13 CAS (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1538 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 411 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Pnig24G0004910 Terpenoid BAHD medium pass BAHD__00025__sp_O64810_SCP10_ARATH
Pnig24G0010890 Terpenoid BAHD medium pass BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH
Pnig24G0011010 Terpenoid BAHD low borderline BAHD__00055__sp_Q8H780_SCP13_ARATH
Pnig24G0012730 Terpenoid BAHD medium pass BAHD__00063__sp_Q93VV0_ZDHC6_ARATH
Pnig24G0012810 Terpenoid BAHD medium pass BAHD__00071__sp_Q9CAY3_GPAT5_ARATH
Pnig24G0012820 Terpenoid BAHD medium pass BAHD__00078__sp_Q9LHS7_GPAT7_ARATH
Pnig24G0015510 Terpenoid BAHD low borderline BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
Pnig24G0015950 Terpenoid BAHD medium pass BAHD__00027__sp_O80437_GPAT6_ARATH
Pnig24G0016030 Terpenoid BAHD medium pass BAHD__00073__sp_Q9FF86_DCR_ARATH
Pnig24G0016060 Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
Pnig25G0008310 Terpenoid BAHD low borderline BAHD__00073__sp_Q9FF86_DCR_ARATH
Pnig25G0009770 Terpenoid BAHD medium pass BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE
Pnig25G0013750 Terpenoid BAHD medium pass BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ
Pnig25G0015170 Terpenoid BAHD medium pass BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
Pnig25G0016140 Terpenoid BAHD low borderline BAHD__00025__sp_O64810_SCP10_ARATH
Pnig26G0004030 Terpenoid BAHD medium pass BAHD__00012__sp_A1XWY7_CFAT_PETHY
Pnig26G0010920 Terpenoid BAHD medium pass BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Pnig26G0011850 Terpenoid BAHD medium pass BAHD__00043__sp_Q52T38_ZDH22_ARATH