PlantSME Plant secondary metabolism enzyme database

Piper nigrum (piper_nigrum)

Imported from atlas release summary for Piper nigrum.

2845
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 924 18 TPS (287) View species results
Alkaloid pathway 700 30 GES (204) View species results
Phenylpropanoid pathway 568 13 POD (198) View species results
Flavonoid pathway 255 13 UFGT (67) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 149 13 CAS (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1538 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 411 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status Best Target
Pnig01G0015620 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig01G0015630 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig01G0015670 Alkaloid PMT low borderline PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig01G0025100 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig02G0007720 Alkaloid PMT low borderline PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig02G0008160 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig04G0016800 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig04G0017110 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig05G0022760 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig05G0022830 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig05G0022850 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig05G0029090 Alkaloid PMT low borderline PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig05G0032400 Alkaloid PMT low borderline PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig07G0004770 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig07G0023530 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig07G0023540 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig07G0028860 Alkaloid PMT low borderline PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig07G0029260 Alkaloid PMT low borderline PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig07G0033210 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig11G0001610 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig11G0001720 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig12G0008550 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig13G0010190 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig14G0005070 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig14G0005080 Alkaloid PMT low borderline PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig14G0005100 Alkaloid PMT low borderline PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig14G0005120 Alkaloid PMT low borderline PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig14G0005130 Alkaloid PMT low borderline PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig14G0005150 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig14G0005170 Alkaloid PMT low borderline PMT__00002__sp_Q5JNT2_AT4_ORYSJ
Pnig21G0005530 Alkaloid PMT medium pass PMT__00002__sp_Q5JNT2_AT4_ORYSJ