PlantSME Plant secondary metabolism enzyme database

Piper nigrum (piper_nigrum)

Imported from atlas release summary for Piper nigrum.

2845
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 924 18 TPS (287) View species results
Alkaloid pathway 700 30 GES (204) View species results
Phenylpropanoid pathway 568 13 POD (198) View species results
Flavonoid pathway 255 13 UFGT (67) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 149 13 CAS (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1538 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 411 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'5'H/CYP75A
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Gene Pathway Family Confidence Status Best Target
Pnig15G0011670 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00003__sp_P48418_C75A1_PETHY
Pnig16G0004000 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig16G0020200 Flavonoid F3'5'H/CYP75A low borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig17G0001350 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig17G0005900 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig17G0007940 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig19G0009170 Flavonoid F3'5'H/CYP75A low borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig19G0009180 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00003__sp_P48418_C75A1_PETHY
Pnig19G0009200 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00002__sp_O04790_C75A7_EUSRU
Pnig19G0009250 Flavonoid F3'5'H/CYP75A low borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig19G0009270 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig19G0015190 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig19G0015230 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig19G0015300 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig20G0004120 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00003__sp_P48418_C75A1_PETHY
Pnig20G0018090 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig21G0004990 Flavonoid F3'5'H/CYP75A low borderline F35H_CYP75A__00003__sp_P48418_C75A1_PETHY
Pnig21G0006840 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig21G0006850 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00003__sp_P48418_C75A1_PETHY
Pnig23G0010430 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig23G0011710 Flavonoid F3'5'H/CYP75A medium pass F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
Pnig24G0010820 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC
PnigPn410000020 Flavonoid F3'5'H/CYP75A medium borderline F35H_CYP75A__00001__sp_A0A4D6Q414_CYP2_CROXC