PlantSME Plant secondary metabolism enzyme database

Piper nigrum (piper_nigrum)

Imported from atlas release summary for Piper nigrum.

2845
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 924 18 TPS (287) View species results
Alkaloid pathway 700 30 GES (204) View species results
Phenylpropanoid pathway 568 13 POD (198) View species results
Flavonoid pathway 255 13 UFGT (67) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 149 13 CAS (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1538 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 411 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status Best Target
Pnig09G0014490 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig11G0005650 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig11G0014290 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Pnig12G0006940 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig13G0007630 Flavonoid F3H medium borderline F3H__00005__sp_Q7XZQ6_FLS_PETCR
Pnig13G0017580 Flavonoid F3H low borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
Pnig13G0018220 Flavonoid F3H low borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig13G0019190 Flavonoid F3H medium borderline F3H__00008__sp_Q96330_FLS1_ARATH
Pnig13G0020170 Flavonoid F3H medium borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
Pnig13G0020190 Flavonoid F3H medium borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
Pnig14G0011200 Flavonoid F3H medium borderline F3H__00003__sp_Q7XM21_FL3H1_ORYSJ
Pnig14G0011220 Flavonoid F3H low borderline F3H__00004__sp_Q7XR84_FL3H3_ORYSJ
Pnig15G0007340 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig15G0019350 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig16G0008480 Flavonoid F3H medium borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
Pnig16G0013070 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig17G0012120 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig19G0002720 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig19G0007290 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig19G0008120 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig19G0009480 Flavonoid F3H medium borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
Pnig19G0009490 Flavonoid F3H medium borderline F3H__00002__sp_A0A4D6Q9B0_FL3H1_CROXC
Pnig20G0004570 Flavonoid F3H medium borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
Pnig20G0006160 Flavonoid F3H medium borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
Pnig20G0006780 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig20G0012010 Flavonoid F3H medium borderline F3H__00009__sp_Q9ZWQ9_FLS_CITUN
Pnig20G0013600 Flavonoid F3H medium borderline F3H__00008__sp_Q96330_FLS1_ARATH
Pnig21G0013930 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig21G0014280 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig21G0014380 Flavonoid F3H low borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig21G0014850 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig21G0015200 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig21G0015810 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig22G0008860 Flavonoid F3H medium borderline F3H__00006__sp_Q7XZQ7_FL3H_PETCR
Pnig22G0008870 Flavonoid F3H low borderline F3H__00004__sp_Q7XR84_FL3H3_ORYSJ
Pnig24G0014410 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig24G0015140 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
Pnig26G0010010 Flavonoid F3H low borderline F3H__00001__sp_A0A4D6Q4T7_FL3H2_CROXC
Pnig26G0013320 Flavonoid F3H low borderline F3H__00001__sp_A0A4D6Q4T7_FL3H2_CROXC
Pnig26G0013340 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ