PlantSME Plant secondary metabolism enzyme database

Piper nigrum (piper_nigrum)

Imported from atlas release summary for Piper nigrum.

2845
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 924 18 TPS (287) View species results
Alkaloid pathway 700 30 GES (204) View species results
Phenylpropanoid pathway 568 13 POD (198) View species results
Flavonoid pathway 255 13 UFGT (67) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 149 13 CAS (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1538 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 411 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'H/CYP75B
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Gene Pathway Family Confidence Status Best Target
Pnig08G0002100 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig08G0002490 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig08G0017140 Flavonoid F3'H/CYP75B medium pass F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig08G0017250 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig08G0017270 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig08G0019530 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig08G0019560 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig08G0019620 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig08G0019640 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig08G0019660 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig09G0022640 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig09G0022660 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig09G0022710 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig09G0022780 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig09G0022830 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig09G0022960 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig09G0023000 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig09G0023030 Flavonoid F3'H/CYP75B low borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig09G0023040 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig09G0023070 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig09G0023110 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig10G0016440 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig10G0016470 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig10G0016530 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig11G0000450 Flavonoid F3'H/CYP75B low borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig11G0000460 Flavonoid F3'H/CYP75B low borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig11G0013180 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00003__sp_Q8LM92_C75B4_ORYSJ
Pnig11G0013190 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig11G0013210 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig11G0013230 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig11G0013240 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig11G0013440 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig11G0013460 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig11G0013490 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig11G0021510 Flavonoid F3'H/CYP75B low borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig11G0021520 Flavonoid F3'H/CYP75B low borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig12G0004040 Flavonoid F3'H/CYP75B low borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig12G0004050 Flavonoid F3'H/CYP75B medium pass F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig12G0004070 Flavonoid F3'H/CYP75B medium pass F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig12G0004120 Flavonoid F3'H/CYP75B low borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig12G0011290 Flavonoid F3'H/CYP75B low borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig12G0011360 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig12G0011370 Flavonoid F3'H/CYP75B medium pass F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig13G0002960 Flavonoid F3'H/CYP75B low borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig13G0015360 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig13G0016820 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig14G0010130 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig15G0000990 Flavonoid F3'H/CYP75B low borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ
Pnig15G0003700 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC
Pnig15G0004370 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00002__sp_Q7G602_C75B3_ORYSJ