PlantSME Plant secondary metabolism enzyme database

Piper nigrum (piper_nigrum)

Imported from atlas release summary for Piper nigrum.

2845
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Current group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.48% Alkaloid pathway 24.6% Phenylpropanoid pathway 19.96% Flavonoid pathway 8.96% Rosmarinic acid pathway 8.75% Steroid pathway 5.24%
Family Distribution
BAHD 5.81% TPS 5.39% CYP76 5.1% UGT 4.68% 4CL 4.49% POD 4.13% GES 4.11% C4H 3.71%
Other Families 62.59%
More Families (97)
UFGT 174 3.18% 7DLGT 167 3.05% NMT 159 2.9% F3'H/CYP75B 152 2.78% CAS 150 2.74% CAD 128 2.34% C3'H/CYP98A 125 2.28% F5H/CYP84A 109 1.99% G8O/G8H 108 1.97% STR 99 1.81% F3H 90 1.64% COMT 89 1.63% SMT1/SMT2/SMT3 74 1.35% F3'5'H/CYP75A 73 1.33% PAL 69 1.26% CODM/T6ODM 66 1.21% IO 63 1.15% CSE 62 1.13% T16H 58 1.06% CYP71 54 0.99% 6OMT_4OMT_SOMT 50 0.91% ANS/LDOX 50 0.91% HCT 50 0.91% SLS 48 0.88% LAC 48 0.88% TRI/TRII 46 0.84% IFR 46 0.84% FNS 45 0.82% NCS 43 0.79% RAS 43 0.79% CNMT 41 0.75% BR6OX1/CYP85A1 40 0.73% HMGR 40 0.73% CYP80B1 39 0.71% SGD 35 0.64% BBE 34 0.62% CPD/CYP90A1 34 0.62% DWF4/CYP90B1 34 0.62% PMT 31 0.57% DFR 29 0.53% 7DLH 27 0.49% CCR 27 0.49% CCoAOMT 26 0.47% MPO 22 0.4% CHS 22 0.4% ODC 21 0.38% 8HGO 20 0.37% PYKS 19 0.35% TAT 19 0.35% 16OMT 18 0.33% T3O 17 0.31% COR 17 0.31% CYP719 17 0.31% IFS 17 0.31% CPR 17 0.31% H6H 16 0.29% CYP51G1 15 0.27% TYDC_DDC 14 0.26% FPPS 14 0.26% GS 13 0.24% DXS 13 0.24% CYP90D1 11 0.2% SMO1/SMO2 10 0.18% ROT3/CYP90C1 10 0.18% ISY 7 0.13% XMT_MXMT_DXMT 7 0.13% LAMT 7 0.13% HPPR 7 0.13% DET2 7 0.13% TDC 5 0.09% AACT 5 0.09% ADC 4 0.07% ANR 4 0.07% CHI 4 0.07% DWF1 4 0.07% DWF7 4 0.07% FLS 3 0.05% BR6OX2/CYP85A2 3 0.05% HDR/IspH 3 0.05% CMK/IspE 3 0.05% DXR 3 0.05% HMGS 3 0.05% IDI 3 0.05% HDS/IspG 3 0.05% CYP80F1 2 0.04% SQE 2 0.04% SQS/FDFT1 2 0.04% CPI1 2 0.04% PMK 2 0.04% GGPPS 2 0.04% MVD 2 0.04% DWF5 1 0.02% FK 1 0.02% GPPS 1 0.02% MVK 1 0.02% MDS/IspF 1 0.02% MCT/IspD 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 924 18 TPS (287) View species results
Alkaloid pathway 700 30 GES (204) View species results
Phenylpropanoid pathway 568 13 POD (198) View species results
Flavonoid pathway 255 13 UFGT (67) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 149 13 CAS (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1538 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 411 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3'H/CYP75B
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Gene Pathway Family Confidence Status Best Target
PnigPn350000180 Flavonoid F3'H/CYP75B medium borderline F3H_CYP75B__00003__sp_Q8LM92_C75B4_ORYSJ
PnigPn410000030 Flavonoid F3'H/CYP75B low borderline F3H_CYP75B__00001__sp_A0A4D6Q415_CYP1_CROXC