PlantSME Plant secondary metabolism enzyme database

Piper nigrum (piper_nigrum)

Imported from atlas release summary for Piper nigrum.

2845
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 924 18 TPS (287) View species results
Alkaloid pathway 700 30 GES (204) View species results
Phenylpropanoid pathway 568 13 POD (198) View species results
Flavonoid pathway 255 13 UFGT (67) View species results
Rosmarinic acid pathway 249 7 C4H (101) View species results
Steroid pathway 149 13 CAS (74) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1538 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 411 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
Pnig05G0002700 Rosmarinic Acid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Pnig07G0002210 Rosmarinic Acid PAL medium pass PAL__00005__sp_Q50EX7_PAL1_PETHY
Pnig08G0003890 Rosmarinic Acid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Pnig08G0005640 Rosmarinic Acid PAL low borderline PAL__00001__sp_P24481_PAL1_PETCR
Pnig08G0005670 Rosmarinic Acid PAL low borderline PAL__00001__sp_P24481_PAL1_PETCR
Pnig08G0005700 Rosmarinic Acid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Pnig08G0005740 Rosmarinic Acid PAL low borderline PAL__00001__sp_P24481_PAL1_PETCR
Pnig08G0005770 Rosmarinic Acid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Pnig08G0006550 Rosmarinic Acid PAL low borderline PAL__00001__sp_P24481_PAL1_PETCR
Pnig08G0018690 Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Pnig09G0017100 Rosmarinic Acid PAL medium pass PAL__00005__sp_Q50EX7_PAL1_PETHY
Pnig16G0016200 Rosmarinic Acid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Pnig16G0016270 Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Pnig18G0009670 Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Pnig18G0016050 Rosmarinic Acid PAL medium pass PAL__00005__sp_Q50EX7_PAL1_PETHY
Pnig22G0006320 Rosmarinic Acid PAL low borderline PAL__00009__sp_Q9SS45_PAL4_ARATH
Pnig23G0009880 Rosmarinic Acid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Pnig23G0011160 Rosmarinic Acid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Pnig23G0014900 Rosmarinic Acid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH