Piper nigrum (piper_nigrum)
Imported from atlas release summary for Piper nigrum.
2845
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2845
Candidate Genes
BAHD
5.81%
TPS
5.39%
CYP76
5.1%
UGT
4.68%
4CL
4.49%
POD
4.13%
GES
4.11%
C4H
3.71%
Other Families
62.59%
More Families (97)
UFGT
174
3.18%
7DLGT
167
3.05%
NMT
159
2.9%
F3'H/CYP75B
152
2.78%
CAS
150
2.74%
CAD
128
2.34%
C3'H/CYP98A
125
2.28%
F5H/CYP84A
109
1.99%
G8O/G8H
108
1.97%
STR
99
1.81%
F3H
90
1.64%
COMT
89
1.63%
SMT1/SMT2/SMT3
74
1.35%
F3'5'H/CYP75A
73
1.33%
PAL
69
1.26%
CODM/T6ODM
66
1.21%
IO
63
1.15%
CSE
62
1.13%
T16H
58
1.06%
CYP71
54
0.99%
6OMT_4OMT_SOMT
50
0.91%
ANS/LDOX
50
0.91%
HCT
50
0.91%
SLS
48
0.88%
LAC
48
0.88%
TRI/TRII
46
0.84%
IFR
46
0.84%
FNS
45
0.82%
NCS
43
0.79%
RAS
43
0.79%
CNMT
41
0.75%
BR6OX1/CYP85A1
40
0.73%
HMGR
40
0.73%
CYP80B1
39
0.71%
SGD
35
0.64%
BBE
34
0.62%
CPD/CYP90A1
34
0.62%
DWF4/CYP90B1
34
0.62%
PMT
31
0.57%
DFR
29
0.53%
7DLH
27
0.49%
CCR
27
0.49%
CCoAOMT
26
0.47%
MPO
22
0.4%
CHS
22
0.4%
ODC
21
0.38%
8HGO
20
0.37%
PYKS
19
0.35%
TAT
19
0.35%
16OMT
18
0.33%
T3O
17
0.31%
COR
17
0.31%
CYP719
17
0.31%
IFS
17
0.31%
CPR
17
0.31%
H6H
16
0.29%
CYP51G1
15
0.27%
TYDC_DDC
14
0.26%
FPPS
14
0.26%
GS
13
0.24%
DXS
13
0.24%
CYP90D1
11
0.2%
SMO1/SMO2
10
0.18%
ROT3/CYP90C1
10
0.18%
ISY
7
0.13%
XMT_MXMT_DXMT
7
0.13%
LAMT
7
0.13%
HPPR
7
0.13%
DET2
7
0.13%
TDC
5
0.09%
AACT
5
0.09%
ADC
4
0.07%
ANR
4
0.07%
CHI
4
0.07%
DWF1
4
0.07%
DWF7
4
0.07%
FLS
3
0.05%
BR6OX2/CYP85A2
3
0.05%
HDR/IspH
3
0.05%
CMK/IspE
3
0.05%
DXR
3
0.05%
HMGS
3
0.05%
IDI
3
0.05%
HDS/IspG
3
0.05%
CYP80F1
2
0.04%
SQE
2
0.04%
SQS/FDFT1
2
0.04%
CPI1
2
0.04%
PMK
2
0.04%
GGPPS
2
0.04%
MVD
2
0.04%
DWF5
1
0.02%
FK
1
0.02%
GPPS
1
0.02%
MVK
1
0.02%
MDS/IspF
1
0.02%
MCT/IspD
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 924 | 18 | TPS (287) | View species results |
| Alkaloid pathway | 700 | 30 | GES (204) | View species results |
| Phenylpropanoid pathway | 568 | 13 | POD (198) | View species results |
| Flavonoid pathway | 255 | 13 | UFGT (67) | View species results |
| Rosmarinic acid pathway | 249 | 7 | C4H (101) | View species results |
| Steroid pathway | 149 | 13 | CAS (74) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1538 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 411 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pnig12G0015380 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig13G0001930 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig13G0016850 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pnig13G0016920 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pnig13G0017420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig13G0023570 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig14G0005320 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig14G0011180 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig14G0011270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig14G0017220 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pnig15G0002440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig15G0002890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig15G0003620 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pnig15G0014120 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pnig15G0023660 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig16G0009530 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig17G0014960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig18G0016830 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig19G0017150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig19G0019010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig20G0008810 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pnig20G0008830 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pnig20G0014070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig20G0014140 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig20G0016100 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig20G0017080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig21G0001620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig21G0003770 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pnig21G0003780 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Pnig22G0008820 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig22G0008930 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig22G0008960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig23G0009300 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig23G0009310 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig24G0001230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig24G0015750 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig25G0005400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig25G0005660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig25G0008910 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig25G0009490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig25G0015010 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pnig26G0001060 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig26G0001290 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig26G0005510 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig26G0007770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig26G0010040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig26G0010050 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig26G0013280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pnig26G0013290 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |