PlantSME Plant secondary metabolism enzyme database

Populus tremula (populus_tremula)

Imported from atlas release summary for Populus tremula.

3319
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 927 20 BAHD (456) View species results
Alkaloid pathway 791 24 NMT (188) View species results
Phenylpropanoid pathway 711 13 POD (308) View species results
Flavonoid pathway 335 11 UFGT (164) View species results
Steroid pathway 312 13 CAS (122) View species results
Rosmarinic acid pathway 243 7 4CL (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2142 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 662 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
Potra000147g00516.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Potra000381g01695.1 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
Potra000381g01695.2 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
Potra000381g01695.3 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
Potra000381g01695.4 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
Potra000381g01695.5 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
Potra000381g01695.6 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
Potra000381g01695.7 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
Potra000381g01695.8 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
Potra000390g01788.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Potra000413g02039.1 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Potra000415g02080.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Potra000415g02080.2 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Potra000415g02081.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Potra000415g33939.1 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
Potra000457g02632.1 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Potra000588g04424.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Potra000588g04424.2 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Potra000588g04424.3 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Potra000588g04424.4 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Potra000588g04424.5 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Potra000588g04424.6 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Potra000588g04425.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Potra000588g04425.2 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Potra000588g04426.1 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Potra000588g04426.2 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Potra000588g04426.3 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Potra000625g04761.1 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Potra000625g04761.2 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Potra000625g04761.3 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Potra000625g04761.4 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
Potra000665g05148.1 Phenylpropanoid CAD low borderline CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Potra000718g05627.1 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
Potra000762g06021.1 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Potra000762g06021.2 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Potra000762g06021.3 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Potra000762g06021.4 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Potra000762g06021.5 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Potra000762g06021.6 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Potra000762g06021.7 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Potra000762g06021.8 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Potra000781g06157.1 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Potra000781g06157.2 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Potra000781g06157.3 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Potra000781g06157.5 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Potra000781g06157.6 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Potra000781g06157.7 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Potra000781g06157.8 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Potra000781g06157.9 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Potra000799g06337.1 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM