PlantSME Plant secondary metabolism enzyme database

Populus tremula (populus_tremula)

Imported from atlas release summary for Populus tremula.

3319
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 927 20 BAHD (456) View species results
Alkaloid pathway 791 24 NMT (188) View species results
Phenylpropanoid pathway 711 13 POD (308) View species results
Flavonoid pathway 335 11 UFGT (164) View species results
Steroid pathway 312 13 CAS (122) View species results
Rosmarinic acid pathway 243 7 4CL (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2142 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 662 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
Potra002320g17700.9 Alkaloid GS medium pass
Potra003066g20662.1 Alkaloid GS high pass
Potra003066g20662.2 Alkaloid GS high pass
Potra003066g20662.3 Alkaloid GS high pass
Potra003585g22095.1 Alkaloid GS medium pass
Potra003585g22095.2 Alkaloid GS medium pass
Potra003601g22141.1 Alkaloid GS high pass
Potra003601g22141.2 Alkaloid GS high pass
Potra003601g22141.3 Alkaloid GS medium pass
Potra003820g22982.1 Alkaloid GS high pass
Potra003888g23347.1 Alkaloid GS high pass
Potra004053g24393.1 Alkaloid GS high pass
Potra004137g24606.1 Alkaloid GS low borderline
Potra004137g24606.2 Alkaloid GS low borderline
Potra004137g24606.3 Alkaloid GS low borderline
Potra004562g25071.1 Alkaloid GS low borderline
Potra004562g25071.2 Alkaloid GS low borderline
Potra004562g25071.3 Alkaloid GS low borderline
Potra156286g26789.1 Alkaloid GS low borderline
Potra156286g26789.2 Alkaloid GS low borderline
Potra156286g26789.3 Alkaloid GS low borderline
Potra156286g26789.4 Alkaloid GS low borderline
Potra156286g26789.5 Alkaloid GS low borderline
Potra156286g26789.6 Alkaloid GS low borderline
Potra156286g26789.7 Alkaloid GS low borderline
Potra156286g26789.8 Alkaloid GS low borderline
Potra164140g27152.1 Alkaloid GS low borderline
Potra172950g27614.1 Alkaloid GS medium pass
Potra172950g27614.2 Alkaloid GS medium pass
Potra172950g27615.1 Alkaloid GS medium pass
Potra172950g27615.2 Alkaloid GS medium pass
Potra172950g27615.3 Alkaloid GS medium pass
Potra175155g27778.1 Alkaloid GS high pass
Potra175155g27778.2 Alkaloid GS high pass
Potra175155g27778.3 Alkaloid GS high pass
Potra175156g33733.1 Alkaloid GS medium pass
Potra191525g28761.1 Alkaloid GS high pass
Potra191525g28761.2 Alkaloid GS high pass
Potra191525g28761.3 Alkaloid GS high pass
Potra191525g28761.4 Alkaloid GS high pass
Potra195207g29025.1 Alkaloid GS low borderline