PlantSME Plant secondary metabolism enzyme database

Populus tremula (populus_tremula)

Imported from atlas release summary for Populus tremula.

3319
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 927 20 BAHD (456) View species results
Alkaloid pathway 791 24 NMT (188) View species results
Phenylpropanoid pathway 711 13 POD (308) View species results
Flavonoid pathway 335 11 UFGT (164) View species results
Steroid pathway 312 13 CAS (122) View species results
Rosmarinic acid pathway 243 7 4CL (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2142 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 662 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
Potra001483g12391.2 Alkaloid H6H low borderline
Potra001688g13811.1 Alkaloid H6H low borderline
Potra001834g14752.1 Alkaloid H6H low borderline
Potra001958g15463.1 Alkaloid H6H low borderline
Potra001958g15463.2 Alkaloid H6H low borderline
Potra002019g15833.1 Alkaloid H6H medium pass
Potra002038g15935.1 Alkaloid H6H low borderline
Potra002071g16146.1 Alkaloid H6H medium borderline
Potra002071g16146.2 Alkaloid H6H medium borderline
Potra002071g16146.3 Alkaloid H6H medium borderline
Potra002071g16146.4 Alkaloid H6H medium borderline
Potra002071g16146.5 Alkaloid H6H medium borderline
Potra002281g17484.2 Alkaloid H6H low borderline
Potra002372g18072.1 Alkaloid H6H low borderline
Potra002423g18416.1 Alkaloid H6H medium borderline
Potra002920g20310.1 Alkaloid H6H medium pass
Potra002954g20385.1 Alkaloid H6H low borderline
Potra003214g21017.1 Alkaloid H6H low borderline
Potra003214g21017.2 Alkaloid H6H low borderline
Potra003223g21057.1 Alkaloid H6H low borderline
Potra003594g22108.1 Alkaloid H6H medium borderline
Potra003594g22108.2 Alkaloid H6H medium borderline
Potra003594g22108.3 Alkaloid H6H medium borderline
Potra003656g22325.1 Alkaloid H6H medium pass
Potra003656g22325.2 Alkaloid H6H medium pass
Potra003656g22325.3 Alkaloid H6H low borderline
Potra003656g22325.4 Alkaloid H6H low borderline
Potra003786g22859.1 Alkaloid H6H medium borderline
Potra003786g22859.2 Alkaloid H6H medium borderline
Potra003814g22960.1 Alkaloid H6H low borderline
Potra003936g23629.1 Alkaloid H6H medium borderline
Potra003993g24043.1 Alkaloid H6H medium borderline
Potra003993g24043.2 Alkaloid H6H medium borderline
Potra004028g24342.1 Alkaloid H6H low borderline
Potra004028g24342.2 Alkaloid H6H low borderline
Potra004347g24835.1 Alkaloid H6H medium borderline
Potra004347g24835.2 Alkaloid H6H medium borderline
Potra005601g25438.1 Alkaloid H6H medium borderline
Potra005601g25438.2 Alkaloid H6H medium borderline
Potra154545g34452.1 Alkaloid H6H low borderline
Potra161312g26925.1 Alkaloid H6H low borderline
Potra170408g31144.1 Alkaloid H6H low borderline
Potra175425g27798.1 Alkaloid H6H high pass
Potra175425g27798.2 Alkaloid H6H low borderline
Potra175425g27798.3 Alkaloid H6H low borderline
Potra193887g28909.1 Alkaloid H6H medium borderline
Potra193887g28909.2 Alkaloid H6H medium borderline
Potra197674g29244.1 Alkaloid H6H medium borderline
Potra199625g29419.1 Alkaloid H6H low borderline
Potra199625g29420.1 Alkaloid H6H low borderline